adcirc-v55.02 for ARCHER2

A folder containing ADCIRC-55.02 source code used for various studies, along with compiling setting. It includes the particular version of the source code used, and scripts to compile and run it on Archer2.

On Archer2 I have found that the cray gfortran compilers seem to work the best for compiling ADCIRC.

One particular issue in the code is the presence of Fortran from multiple styles (ending determined), and very long lines (up to 132 characters).

I found that trying to use the default cray compilers was very difficult, as the compiler flag, which should have been -N 132 did not seem to work.

The cmake method seems to be much more reliable than Makefile.

Getting Python loaded

#source ~/.bashrc
source /work/n02/n02/sdat2/.bashrc

micromamba activate t1

Running jobs

squeue -u $USER

Look at old jobs

sacct -l -u $USER

Manual Pages for SWAN/ADCIRC

Compiling SWAN manual pages https://swanmodel.sourceforge.io/online_doc/swanimp/node8.html

ADCIRC architecture https://adcirc.org/wp-content/uploads/sites/2255/2013/02/ADCIRC-Architecture.png

ADCIRC compiling. https://wiki.adcirc.org/wiki/Compiling

ADCIRC inputs structure

• fort.11 = density initial conditions
• fort.13 = nodal attributes
• fort.14 = mesh
• fort.15 = input parameters
• fort.19 = Non periodic, time varying elevation boundary condition file if eleveation specificed boundary nodes.
• fort.20 = Non periodic, Normal Flux Boundary Condition.
• fort.22 = Meteorological Forcing
• fort.23 = Wave radiaiton stress frocing
• fort.61, fort.62, fot.81, fort.71, fort.71 = elevation, velocity, concentation, met stations
• fort.63, fort.64, fort.83, fort.73, fort.74 = global elevation, velociyt, concentratiion, met stations.

Holland Hurricane Model

https://github.com/CLIMADA-project/climada_python

https://github.com/ec-jrc/pyStorms/blob/master/Notebooks/Estimate%20Holland%20Parameters.ipynb

Figure generation script based on GMT

https://ccht.ccee.ncsu.edu/figuregen-v-49/

Run Test

cd /work/n01/n01/sithom/adcirc-swan/inputs/adcirc_katrina-2d-parallel
sbatch submit.slurm

Getting NWS 13 span up

TODO:

• Verify different model setups against tidal gauge data.

Moving files:

rsync -rvtaP --dry-run sithom@archer2-login.ac.uk:/work/n01/n01/users/sithom .

/mnt/lustre/a2fs-work1/work/n01/n01/sithom /work/n02/n02/sdat2

Getting git-lfs for downloading testsuite data

wget https://github.com/git-lfs/git-lfs/releases/download/v3.5.1/git-lfs-linux-amd64-v3.5.1.tar.gz
tar -xzvf git-lfs-linux-amd64-v3.5.1.tar.gz 
cd git-lfs-3.5.1/
sh install.sh --local
git lfs install