Update instance repo (PR 491 -- [WIP] Automate escaping GitHub usernames in release messages)

.cruft.json

@@ -1,6 +1,6 @@
 {
   "template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-  "commit": "1da1d71043735a63d87f13e16caf5d9b90b3ba56",
+  "commit": "19cf7596149bdeb1b8354aa3947c862f34d50b58",
   "checkout": null,
   "context": {
     "cookiecutter": {
@@ -36,7 +36,7 @@
         "trim_blocks": true
       },
       "_template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-      "_commit": "1da1d71043735a63d87f13e16caf5d9b90b3ba56"
+      "_commit": "19cf7596149bdeb1b8354aa3947c862f34d50b58"
     }
   },
   "directory": null

.pre-commit-config.yaml

@@ -7,16 +7,16 @@ default_stages:
 minimum_pre_commit_version: 2.16.0
 repos:
   - repo: https://github.com/biomejs/pre-commit
-    rev: v2.4.6
+    rev: v2.4.16
     hooks:
       - id: biome-format
         exclude: ^\.cruft\.json$ # inconsistent indentation with cruft - file never to be modified manually.
   - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: v2.16.2
+    rev: v2.23.0
     hooks:
       - id: pyproject-fmt
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.15.5
+    rev: v0.15.15
     hooks:
       - id: ruff-check
         types_or: [python, pyi, jupyter]

docs/template_usage.md

@@ -147,7 +147,8 @@ There you can see the execution history, logs, and (re-)trigger workflows manual
 
 ## Automating the PyPI release using GitHub actions
 
-Tags adhering to `"*.*.*"` that are pushed to the `main` branch will trigger the release Github workflow that automatically builds and uploads the Python package to [PyPI][].
+Releases created via the [Github releases UI][github-releases]
+will trigger the release Github workflow that automatically builds and uploads the Python package to [PyPI][].
 
 For this to work, you'll need to setup GitHub as a [trusted publisher][] on PyPI.
 To set this up, login to [PyPI][], and proceed depending on whether you already have your project on there or not:
@@ -159,6 +160,10 @@ The "Workflow name" needs to bet set to `release.yaml`.
 Set "Environment name" to “pypi” to match `environment: pypi` in `.github/workflows/release.yaml`.
 For more details, please refer to the official [PyPI guide for setting up trusted publishing][trusted publisher].
 
+If you added a new pending publisher to set up your project,
+the project will be published only once you release your package for the first time (see above).
+
+[github-releases]: https://docs.github.com/en/repositories/releasing-projects-on-github/about-releases
 [pypi-trusted-publishing-guide]: https://docs.pypi.org/trusted-publishers/adding-a-publisher/
 
 [PyPI]: https://pypi.org/

pyproject.toml

@@ -60,11 +60,10 @@ doc = [
 [tool.hatch]
 envs.default.installer = "uv"
 envs.default.dependency-groups = [ "dev" ]
-envs.docs.dependency-groups = [ "doc" ]
 envs.docs.scripts.build = "sphinx-build -M html docs docs/_build -W {args}"
-envs.docs.scripts.open = "python -m webbrowser -t docs/_build/html/index.html"
 envs.docs.scripts.clean = "git clean -fdX -- {args:docs}"
-envs.hatch-test.dependency-groups = [ "dev", "test" ]
+envs.docs.scripts.open = "python -m webbrowser -t docs/_build/html/index.html"
+envs.docs.dependency-groups = [ "doc" ]
 envs.hatch-test.matrix = [
   # Test the lowest and highest supported Python versions with normal deps
   { deps = [ "stable" ], python = [ "3.11", "3.14" ] },
@@ -74,8 +73,9 @@ envs.hatch-test.matrix = [
 # If the matrix variable `deps` is set to "pre",
 # set the environment variable `UV_PRERELEASE` to "allow".
 envs.hatch-test.overrides.matrix.deps.env-vars = [
-  { key = "UV_PRERELEASE", value = "allow", if = [ "pre" ] },
+  { value = "allow", key = "UV_PRERELEASE", if = [ "pre" ] },
 ]
+envs.hatch-test.dependency-groups = [ "dev", "test" ]
 
 [tool.ruff]
 line-length = 120
@@ -116,11 +116,11 @@ lint.per-file-ignores."tests/*" = [ "D" ]
 lint.pydocstyle.convention = "numpy"
 
 [tool.pytest]
-strict = true
-testpaths = [ "tests" ]
 addopts = [
   "--import-mode=importlib", # allow using test files with same name
 ]
+strict = true
+testpaths = [ "tests" ]
 
 [tool.coverage]
 run.omit = [

src/cookiecutter_scverse_instance/__init__.py

@@ -1,7 +1,3 @@
-from importlib.metadata import version
-
 from . import pl, pp, tl
 
 __all__ = ["pl", "pp", "tl"]
-
-__version__ = version("cookiecutter-scverse-instance")

tests/test_basic.py

@@ -3,10 +3,6 @@
 import cookiecutter_scverse_instance
 
 
-def test_package_has_version():
-    assert cookiecutter_scverse_instance.__version__ is not None
-
-
 @pytest.mark.skip(reason="This decorator should be removed when test passes.")
 def test_example():
     assert 1 == 0  # This test is designed to fail.