feat: extend NetworkCommons toward perturbation biology with LEMBAS integration#72

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Commits on Jun 17, 2026

Add LEMBAS data retrieval module to networkcommons

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Add LEMBAS perturbation-response pipeline with baselines and tests

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Add per-condition evaluation axis, LEMBAS tutorial notebook, and torch optional dep

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Commits on Jun 22, 2026

Commits on Jun 26, 2026

chore: add flop/pertpy/torch-cu128 extras, rdata dep, and dev-cu128 env

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fix: resolve issues surfaced by re-running notebooks after env modernisation

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feat: add get_hmdb_mapper to MOON data module

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feat: faithfully reimplement LEMBAS-RNN matching Nilsson et al. 2022

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fix: update tests broken by env modernisation and decoupler 2.x fix

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ci: switch uv sync from --locked to --frozen in test workflow

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Commits on Jun 27, 2026

feat: add omnipath-client dependency, note workaround branch for get_hmdb_mapper

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