Add support for syncmers

.github/workflows/rust.yml

@@ -18,6 +18,8 @@ jobs:
         run: cargo build --verbose --package simd-minimizers
       - name: Run tests
         run: cargo test --verbose --package simd-minimizers
+      - name: Run tests release
+        run: cargo test --release --verbose --package simd-minimizers
 
   test-mac:
     runs-on: macos-latest
@@ -27,3 +29,5 @@ jobs:
         run: cargo build --verbose --package simd-minimizers
       - name: Run tests
         run: cargo test --verbose --package simd-minimizers
+      - name: Run tests release
+        run: cargo test --release --verbose --package simd-minimizers

README.md

@@ -57,6 +57,14 @@ let minimizer_vals: Vec<u64> = canonical_minimizers(k, w)
     .run(packed_seq.as_slice(), &mut minimizer_positions)
     .values_u64()
     .collect();
+
+// Compute _syncmers_ positions and values instead:
+let mut syncmer_positions = Vec::new();
+// List of (k+w-1)-mer values.
+let syncmer_vals: Vec<u64> = canonical_syncmers(k, w)
+    .run(packed_seq.as_slice(), &mut syncmer_positions)
+    .values_u64()
+    .collect();
 ```
 
 ## Benchmarks

src/collect.rs

@@ -34,6 +34,7 @@ pub fn collect_and_dedup_into_scalar(mut it: impl Iterator<Item = u32>, out_vec:
     });
     out_vec.truncate(idx + 1);
 }
+
 pub fn collect_and_dedup_with_index_into_scalar(
     it: impl Iterator<Item = u32>,
     out_vec: &mut Vec<u32>,
@@ -111,7 +112,7 @@ pub trait CollectAndDedup: Sized {
     /// Works by taking 8 elements from each stream, and then transposing the SIMD-matrix before writing out the results.
     ///
     /// By default (when `SUPER` is false), the deduplicated input values are written in `out_vec`.
-    /// When `SUPER` is true, the index of the stream in which the input value first appeared, i.e., the start of its super-k-mer, is additionale written in `idx_vec`.
+    /// When `SUPER` is true, the index in the stream where the input value first appeared, i.e., the start of its super-k-mer, is additionaly written in `idx_vec`.
     fn collect_and_dedup_into_impl<const SUPER: bool, const SKIP_MAX: bool>(
         self,
         out_vec: &mut Vec<u32>,