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feat: add Prof. Jiang 4-mer data pipeline + BAM download manifest DeepCatch Validation #59: Commit 1ee329d pushed by rollroyces
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feat: add Priming Agents AI module + whitepaper + pitch deck (7th mod… DeepCatch Validation #58: Commit 1b8f170 pushed by rollroyces
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docs: rewrite README for v2.1 — full module reference, architecture, … DeepCatch Validation #57: Commit c1f73d9 pushed by rollroyces
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feat: add Foundation Model — multi-modal Transformer pre-training (re… DeepCatch Validation #56: Commit ba4d018 pushed by rollroyces
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feat: add Tissue Deconvolution modality — cfSort-style DNN head (6th … DeepCatch Validation #55: Commit 62b264a pushed by rollroyces
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test: add full test suite for enhanced fragmentomics features (42 tests) DeepCatch Validation #54: Commit 9c1aca5 pushed by rollroyces
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feat: enhance fragmentomics features — DELFI + MFS + nucleosome + ref… DeepCatch Validation #53: Commit 7c43f85 pushed by rollroyces
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fix: integration tests — all 46 pass DeepCatch Validation #52: Commit 12e0d06 pushed by rollroyces
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feat: add GNN Methylation Network Extension to Stage 1 (Capture) DeepCatch Validation #51: Commit d5a73c5 pushed by rollroyces
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fix: consolidate DeepCatch fixes — paper, docker, syntax, citation, g… DeepCatch Validation #50: Commit e07cdeb pushed by rollroyces
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Add .xlsx to .gitignore (prevent patient data leaks) DeepCatch Validation #49: Commit 4452f68 pushed by rollroyces
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Remove Jiang data from tracking (protect patient privacy) DeepCatch Validation #48: Commit 8c812c0 pushed by rollroyces
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Add wiki pages, motif extraction script, BAM generator DeepCatch Validation #47: Commit e5ed13d pushed by rollroyces
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Clean repo: untrack paper/research/review/results archive files DeepCatch Validation #46: Commit 961a613 pushed by rollroyces
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Update README §9 with rank+ratio pipeline results (AUC 0.986/0.996) DeepCatch Validation #45: Commit 1e6b2a1 pushed by rollroyces
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Add rank transformation (--rank-features, default on) DeepCatch Validation #44: Commit 85e5015 pushed by rollroyces
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Add CG/AT composition ratio features (--ratio-features, default on) DeepCatch Validation #43: Commit f327d49 pushed by rollroyces
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Fix documentation issues from full docs review DeepCatch Validation #42: Commit abdc43f pushed by rollroyces
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Fix 8 code review issues DeepCatch Validation #41: Commit 87a3833 pushed by rollroyces
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Remove remaining unverified content from README DeepCatch Validation #40: Commit d2b7e81 pushed by rollroyces
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Strip all unverified simulation numbers from README DeepCatch Validation #39: Commit 74c00e0 pushed by rollroyces
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Strip §9 to only verified HCC results DeepCatch Validation #38: Commit c7c0e58 pushed by rollroyces
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Update README §9 with verified nested CV results (AUC 0.982) DeepCatch Validation #37: Commit ae77b09 pushed by rollroyces
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Improve LR regularization (C=10.0) + p-value feature selection DeepCatch Validation #36: Commit 5bcec64 pushed by rollroyces
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v2.1 — Real plasma validation pipeline: nested CV CET, frequency inpu… DeepCatch Validation #35: Commit 383d48b pushed by rollroyces
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