Bodhi HPC User Guide

Documentation site for the Bodhi HPC cluster — SLURM usage, backups, and support contacts.

Live site: https://rnabioco.github.io/bodhi-docs/

Local development

Requires pixi:

# Serve docs locally at http://localhost:8000
pixi run docs

# Build the site (strict mode)
pixi run build

Converter script

A sed-based helper that converts common #BSUB directives and $LSB_* variables to SLURM equivalents:

bash scripts/lsf2slurm.sh myjob.lsf > myjob.slurm

See the converter documentation for details on what it does and doesn't handle.

Deployment

Pushes to main automatically build and deploy to GitHub Pages via GitHub Actions. The site is served from the gh-pages branch.

To enable: Settings → Pages → Source → gh-pages branch.