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rklocke / coverage_exercise Public

forked from sophie22/coverage_exercise_SR

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Genes under 30x#1

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rklocke wants to merge 10 commits intomainrklocke/coverage_exercise:mainfrom

genes_under_30xrklocke/coverage_exercise:genes_under_30xCopy head branch name to clipboard

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Genes under 30x#1
rklocke wants to merge 10 commits intomainfrom
genes_under_30x

Commits

Commits on May 3, 2024

Add function to read sambamba file
rklocke
committed
Add requirements.txt
rklocke
committed
Added function to calculate gene coverage at 30x
rklocke
committed
Added functions to get genes below 30x and write out a report
rklocke
committed
Add example data and update README
rklocke
committed

Commits on May 4, 2024

Add test data, unit tests to run with pytest and add pytest to requirements.txt
rklocke
committed
Update README with example data and command
rklocke
committed
Updated comments and docstrings
rklocke
committed

Commits on May 6, 2024

Add unit test for calculating coverage
rklocke
committed
Add example data for 98% threshold
rklocke
committed

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