feat!: upgrade to newest quil

.github/workflows/benchmark_base.yml

@@ -4,18 +4,17 @@ on:
   release:
     types: [published]
   workflow_dispatch:
-    description: "Manually update benchmarks"
 
 jobs:
   benchmark_base_branch:
     name: Continuous Benchmarking with Bencher
     runs-on: ubuntu-22.04
     steps:
-      - uses: actions/checkout@v4
-      - name: Set up Python 3.9
-        uses: actions/setup-python@v2
+      - uses: actions/checkout@v6
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v6
         with:
-          python-version: '3.9' 
+          python-version: '3.10'
       - uses: actions/cache@v4
         with:
           path: .venv

.github/workflows/benchmark_pr.yml

@@ -10,11 +10,11 @@ jobs:
       pull-requests: write
     runs-on: ubuntu-22.04
     steps:
-      - uses: actions/checkout@v4
-      - name: Set up Python 3.9
-        uses: actions/setup-python@v2
+      - uses: actions/checkout@v6
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v6
         with:
-          python-version: '3.9' 
+          python-version: '3.10'
       - uses: actions/cache@v4
         with:
           path: .venv
@@ -27,8 +27,10 @@ jobs:
           --project pyquil \
           --token '${{ secrets.BENCHER_API_TOKEN }}' \
           --branch '${{ github.head_ref }}' \
-          --branch-start-point '${{ github.base_ref }}' \
-          --branch-start-point-hash '${{ github.event.pull_request.base.sha }}' \
+          --start-point '${{ github.base_ref }}' \
+          --start-point-hash '${{ github.event.pull_request.base.sha }}' \
+          --start-point-clone-thresholds \
+          --start-point-reset \
           --testbed ci-runner-linux \
           --err \
           --github-actions '${{ secrets.GITHUB_TOKEN }}' \

.github/workflows/publish.yml

@@ -4,67 +4,71 @@ on:
   release:
     types: [published]
   workflow_dispatch:
-    description: "Manually publish release"
 
 jobs:
   build-publish:
     name: Build and Publish
     runs-on: ubuntu-latest
+    environment: pypi
+    permissions:
+      id-token: write
+      contents: read
     steps:
-    - uses: actions/checkout@v3
-    - uses: actions/setup-python@v3
-    - uses: snok/install-poetry@v1
-      with:
-        virtualenvs-in-project: true
-    - name: "Build"
-      run: |
-        poetry build --no-interaction
-    - id: publish
-      name: "Publish"
-      run: |
-        poetry config pypi-token.pypi ${{ secrets.PYPI_API_TOKEN }}
-        poetry publish
-        export PYQUIL_TAG_VERSION=$(poetry version --short)
-        export PYQUIL_TAG_LATEST=$([[ "$PYQUIL_TAG_VERSION" =~ ^[0-9]+[.][0-9]+[.][0-9]+$ ]] && echo latest || echo)
-        export PYQUIL_TAG_RC=$([[ "$PYQUIL_TAG_VERSION" =~ ^[0-9]+[.][0-9]+[.][0-9]+-rc[.][0-9]+$ ]] && echo rc || echo)
-        echo "PYQUIL_TAG_VERSION=$PYQUIL_TAG_VERSION" >> "$GITHUB_OUTPUT"
-        echo "PYQUIL_TAG_LATEST=$PYQUIL_TAG_LATEST" >> "$GITHUB_OUTPUT"
-        echo "PYQUIL_TAG_RC=$PYQUIL_TAG_RC" >> "$GITHUB_OUTPUT"
+      - uses: actions/checkout@v6
+      - uses: actions/setup-python@v6
+        with:
+          python-version: '3.12'
+      - uses: snok/install-poetry@v1
+        with:
+          virtualenvs-in-project: true
+      - name: "Build"
+        run: |
+          poetry build --no-interaction
+      - name: Publish to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+      - id: version
+        name: "Get version info"
+        run: |
+          export PYQUIL_TAG_VERSION=$(poetry version --short)
+          export PYQUIL_TAG_LATEST=$([[ "$PYQUIL_TAG_VERSION" =~ ^[0-9]+[.][0-9]+[.][0-9]+$ ]] && echo latest || echo)
+          export PYQUIL_TAG_RC=$([[ "$PYQUIL_TAG_VERSION" =~ ^[0-9]+[.][0-9]+[.][0-9]+-rc[.][0-9]+$ ]] && echo rc || echo)
+          echo "PYQUIL_TAG_VERSION=$PYQUIL_TAG_VERSION" >> "$GITHUB_OUTPUT"
+          echo "PYQUIL_TAG_LATEST=$PYQUIL_TAG_LATEST" >> "$GITHUB_OUTPUT"
+          echo "PYQUIL_TAG_RC=$PYQUIL_TAG_RC" >> "$GITHUB_OUTPUT"
     outputs:
-      PYQUIL_TAG_VERSION: ${{ steps.publish.outputs.PYQUIL_TAG_VERSION }}
-      PYQUIL_TAG_LATEST: ${{ steps.publish.outputs.PYQUIL_TAG_LATEST }}
-      PYQUIL_TAG_RC: ${{ steps.publish.outputs.PYQUIL_TAG_RC }}
+      PYQUIL_TAG_VERSION: ${{ steps.version.outputs.PYQUIL_TAG_VERSION }}
+      PYQUIL_TAG_LATEST: ${{ steps.version.outputs.PYQUIL_TAG_LATEST }}
+      PYQUIL_TAG_RC: ${{ steps.version.outputs.PYQUIL_TAG_RC }}
 
   build-publish-grpc-web:
     name: Build and Publish (pyquil-grpc-web)
     runs-on: ubuntu-latest
+    environment: pypi
     permissions:
       id-token: write
       contents: read
     steps:
-    - uses: actions/checkout@v3
-    - uses: actions/setup-python@v3
-    - uses: snok/install-poetry@v1
-      with:
-        virtualenvs-in-project: true
-    - name: Patch package metadata for grpc-web
-      run: |
-        pip install toml
-        python scripts/ci_publish_grpc_web.py
-    - name: Poetry Build
-      run: |
-        poetry build --no-interaction
-    - name: Upload wheels as artifacts
-      uses: actions/upload-artifact@v2 
-      with: 
-        name: wheels
-        path: dist
-    - name: Mint token
-      id: mint
-      uses: tschm/token-mint-action@v1.0.3
-    - name: Publish the package with poetry
-      run: |
-        poetry publish -u __token__ -p '${{ steps.mint.outputs.api-token }}'
+      - uses: actions/checkout@v6
+      - uses: actions/setup-python@v6
+        with:
+          python-version: '3.12'
+      - uses: snok/install-poetry@v1
+        with:
+          virtualenvs-in-project: true
+      - name: Patch package metadata for grpc-web
+        run: |
+          pip install toml
+          python scripts/ci_publish_grpc_web.py
+      - name: Poetry Build
+        run: |
+          poetry build --no-interaction
+      - name: Upload wheels as artifacts
+        uses: actions/upload-artifact@v6
+        with:
+          name: wheels
+          path: dist
+      - name: Publish to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
 
   docker-publish:
     name: Docker Publish
@@ -78,7 +82,7 @@ jobs:
       # Determine the tags to publish based on the release tag
       - name: Docker Metadata
         id: meta
-        uses: docker/metadata-action@v4
+        uses: docker/metadata-action@v5
         with:
           images: |
             ${{ vars.DOCKER_IMAGE_NAME }}
@@ -88,9 +92,9 @@ jobs:
             type=raw,value=${{ env.PYQUIL_TAG_RC }},enable=${{ env.PYQUIL_TAG_RC != '' }}
       # Checkout is needed to use the path context: .
       - name: Checkout
-        uses: actions/checkout@v3
+        uses: actions/checkout@v6
       - name: Build and Test
-        uses: docker/build-push-action@v4
+        uses: docker/build-push-action@v6
         with:
           context: .
           load: true
@@ -102,12 +106,12 @@ jobs:
           docker run --rm "${{ vars.DOCKER_IMAGE_NAME }}:test" python -c "from pyquil import get_qc"
       # Build and publish the image
       - name: Login to Docker Hub
-        uses: docker/login-action@v2
+        uses: docker/login-action@v3
         with:
           username: ${{ secrets.DOCKERHUB_USERNAME }}
           password: ${{ secrets.DOCKERHUB_PASSWORD }}
       - name: Build and Push
-        uses: docker/build-push-action@v4
+        uses: docker/build-push-action@v6
         with:
           context: .
           push: true

.github/workflows/release-dry-run.yml

@@ -8,6 +8,7 @@ on:
       type:
         description: Runs knope with the --dry-run flag to see what the next release would look like.
         required: true
+        type: "choice"
         default: prerelease
         options:
           - prerelease

.github/workflows/release.yml

@@ -9,6 +9,7 @@ on:
       type:
         description: Bump versions and trigger a new release.
         required: true
+        type: "choice"
         default: prerelease
         options:
           - prerelease
@@ -20,7 +21,7 @@ jobs:
     env:
       GITHUB_TOKEN: ${{ secrets.PAT }}
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v6
       with:
         fetch-depth: 0
         token: ${{ secrets.PAT }}

.github/workflows/test.yml

@@ -12,11 +12,11 @@ jobs:
     name: Build and test documentation
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
-      - name: Set up Python 3.9
-        uses: actions/setup-python@v4
+      - uses: actions/checkout@v6
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v6
         with:
-          python-version: '3.9'
+          python-version: '3.10'
       - uses: actions/cache@v4
         with:
           path: .venv
@@ -32,11 +32,11 @@ jobs:
     name: Check formatting
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
-      - name: Set up Python 3.9
-        uses: actions/setup-python@v4
+      - uses: actions/checkout@v6
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v6
         with:
-          python-version: '3.9'
+          python-version: '3.10'
       - uses: actions/cache@v4
         with:
           path: .venv
@@ -51,11 +51,11 @@ jobs:
     name: Check style
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
-      - name: Set up Python 3.9
-        uses: actions/setup-python@v4
+      - uses: actions/checkout@v6
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v6
         with:
-          python-version: '3.9'
+          python-version: '3.10'
       - uses: actions/cache@v4
         with:
           path: .venv
@@ -70,11 +70,11 @@ jobs:
     name: Check types
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
-      - name: Set up Python 3.9
-        uses: actions/setup-python@v4
+      - uses: actions/checkout@v6
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v6
         with:
-          python-version: '3.9'
+          python-version: '3.10'
       - uses: actions/cache@v4
         with:
           path: .venv
@@ -90,7 +90,7 @@ jobs:
     name: Check dependencies for vulnerabilities
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v6
     - name: Set up Go
       uses: actions/setup-go@v5
     - name: Install OSV scanner
@@ -105,11 +105,11 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v6
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v6
         with:
           python-version: ${{ matrix.python-version }}
       - uses: actions/cache@v4
@@ -133,11 +133,11 @@ jobs:
       pull-requests: write # allows coverage bot to comment
     strategy:
       matrix:
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v6
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v6
         with:
           python-version: ${{ matrix.python-version }}
       - uses: actions/cache@v4
@@ -165,9 +165,9 @@ jobs:
     name: Check docker image
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v6
       - name: Set up Python 3.10
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v6
         with:
           python-version: '3.10'
       - uses: actions/cache@v4
@@ -195,11 +195,11 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v6
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v6
         with:
           python-version: ${{ matrix.python-version }}
       - uses: actions/cache@v4