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Bump pandas from 2.3.1 to 3.0.0#33

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Bump pandas from 2.3.1 to 3.0.0#33
dependabot[bot] wants to merge 3 commits into
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dependabot/pip/pandas-3.0.0

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@dependabot dependabot Bot commented on behalf of github Jan 26, 2026

Bumps pandas from 2.3.1 to 3.0.0.

Release notes

Sourced from pandas's releases.

pandas 3.0.0

We are pleased to announce the release of pandas 3.0.0, a major release from the pandas 2.x series. This release includes various new features, bug fixes, and performance improvements, as well as possible breaking changes.

The pandas 3.0 release removed a functionality that was deprecated in previous releases. It is recommended to first upgrade to pandas 2.3 and to ensure your code is working without warnings, before upgrading to pandas 3.0.

Highlights include:

See the announcement blog post and the detailed release notes for a list of all the changes.

Pandas 3.0.0 supports Python 3.11 and higher. The release can be installed from PyPI

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Pandas 3.0.0rc2

No release notes provided.

Pandas 3.0.0rc1

No release notes provided.

Pandas 3.0.0rc0

We are pleased to announce a first release candidate for pandas 3.0.0. If all goes well, we'll release pandas 3.0.0 in a few weeks.

See the [whatsnew][0] for a list of all the changes.

The release is available on conda-forge and PyPI.

The release can be installed from PyPI

python -m pip install --upgrade --pre pandas==3.0.0rc0

Or from conda-forge

conda install -c conda-forge/label/pandas_rc pandas==3.0.0rc0

Please report any issues with the release candidate on the pandas issue tracker.

... (truncated)

Commits
  • 366ccdf RLS: 3.0.0
  • 139f4d0 DOC: split/reorder other enhancements section in 3.0.0 whatsnew notes (#63762)
  • fd2a4f4 TST: assert reading of legacy pickles against current data (#61792)
  • cc0bcaa DOC: update whatsnew section on datetimelike resolution (#63780)
  • 3ddbb49 DOC: remove 2.3.4 whatsnew file from released 3.0 docs (#63779)
  • ee63532 CLN: Create temporary HDF5 file path and HDFStore for pytables tests (#63492)
  • 9512e99 CoW: better chained assignment warning message for update() method (#63500)
  • 1db90d5 API: rename read_iceberg selected_fields keyword to columns (#63748)
  • c9b51fa BUG: .str methods failing on PyArrow using regex with \Z (#63705)
  • 7cff0f4 API: Period.to_timestamp default to microsecond unit (#63760)
  • Additional commits viewable in compare view

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Note
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Bumps [pandas](https://github.com/pandas-dev/pandas) from 2.3.1 to 3.0.0.
- [Release notes](https://github.com/pandas-dev/pandas/releases)
- [Commits](pandas-dev/pandas@v2.3.1...v3.0.0)

---
updated-dependencies:
- dependency-name: pandas
  dependency-version: 3.0.0
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python Pull requests that update python code labels Jan 26, 2026
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Binder 👈 Launch a binder notebook on branch pyiron/pyiron_workflow_lammps/dependabot/pip/pandas-3.0.0

ligerzero-ai added a commit that referenced this pull request May 15, 2026
* deps: track pyiron_workflow_atomistics 0.0.6 pin set

Bump the runtime pin block to match the versions that
pyiron-workflow-atomistics==0.0.6 (already pinned here) actually
requires, so installs stop conflicting with the upstream resolver.

Verbatim from pwa 0.0.6's METADATA:
  - pandas       2.3.1   -> 3.0.2
  - ase          3.26.0  -> 3.28.0
  - scipy        1.16.1  -> 1.17.1
  - pymatgen     2025.6.14 -> 2026.5.4
  - scikit-learn 1.7.2   -> 1.8.0

Numpy / matplotlib / pyiron-workflow / pyiron-snippets / tqdm /
lz-GB-code already match upstream; pyiron_lammps stays at 0.4.6
(its own bump to 0.5.4 is being tracked separately in #36 and
needs a parser-API review before merging).

Updated in lockstep:
  - pyproject.toml
  - .ci_support/environment.yml
  - .ci_support/lower-bound.yml
  - .binder/environment.yml

Closes the coordinated-bump scope flagged in the open-PR triage:
supersedes #19 (pymatgen), #30 (ase), #33 (pandas), #37 (numpy);
those should be closed once this lands.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* [dependabot skip] Update env file

* deps: bump pyiron-workflow-atomistics 0.0.6 -> 0.0.7

0.0.7 (released 2026-05-14) replaces pwa's exact == pins with
bounded ranges (e.g. numpy <1.27.0,>=1.22.0, ase <3.29.0,>=3.21.0,
pymatgen <2026.6.0,>=2024.8.8). Every version this branch already
chose for the runtime block sits inside those ranges, so the only
file edit needed is the pwa pin itself across:

  - pyproject.toml
  - .ci_support/environment.yml
  - .ci_support/lower-bound.yml
  - .binder/environment.yml

Side benefit: with pwa 0.0.7's looser ranges, the future Dependabot
PRs against pandas / ase / pymatgen / scikit-learn become resolvable
without a second coordinated bump on the pwa side.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* deps: also bump pwa pin to 0.0.7 in docs/environment.yml

Was missed in the previous commit; the CI's [dependabot skip]
runner had auto-mirrored the runtime-block bumps into
docs/environment.yml but did not touch the pwa pin itself,
leaving docs out of sync with the rest of the env files.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Han Mai <ligerzerof@gmail.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Co-authored-by: pyiron-runner <pyiron@mpie.de>
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Superseded by #41 (deps: track pyiron_workflow_atomistics 0.0.7 pin set), which already bumped this dependency to (or past) the version this PR proposes — to match the bounded ranges that pwa 0.0.7 requires. Closing as obsolete.

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dependabot Bot commented on behalf of github May 15, 2026

OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version. You can also ignore all major, minor, or patch releases for a dependency by adding an ignore condition with the desired update_types to your config file.

If you change your mind, just re-open this PR and I'll resolve any conflicts on it.

@dependabot dependabot Bot deleted the dependabot/pip/pandas-3.0.0 branch May 15, 2026 10:45
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