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Trial: python-package-scanner in security workflow #157

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Trial: python-package-scanner in security workflow #157

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2225386
Add python-package-scanner to security workflow
nevoodoo Mar 30, 2026
3c390d9
Update python-package-scanner to fix module import
nevoodoo Mar 30, 2026
90a7f96
Update python-package-scanner to Node.js 24 compatible version
nevoodoo Mar 30, 2026
2feef8c
Add pull_request trigger to security workflow
nevoodoo Mar 30, 2026
8fbb7b0
Update python-package-scanner with dev dependency tracking
nevoodoo Mar 30, 2026
414f20a
Update python-package-scanner with pinned vs no-fix distinction
nevoodoo Mar 30, 2026
7df3399
Merge branch 'main' into test/python-package-scanner
nevoodoo Mar 30, 2026
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18 changes: 18 additions & 0 deletions .github/workflows/security.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,8 @@ name: Security Checks
on:
workflow_dispatch:
push:
branches: [main]
pull_request:

permissions: {}

Expand Down Expand Up @@ -30,6 +32,22 @@ jobs:
ignore-vulns: |
GHSA-8qvm-5x2c-j2w7 # Denial of service in protobuf=3.20.2; hail pins this version.

package-scanner:
runs-on: ubuntu-latest
name: Python Package Scanner
permissions:
pull-requests: write
steps:
- uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 #v4.2.2
with:
persist-credentials: false

- uses: populationgenomics/python-package-scanner@7db0863f7646dcd34df1ee5f2911149f67628eb3 # v0
with:
mode: uv
fail-on-vulns: false
comment-on-pr: true

zizmor:
name: Zizmor Scan
runs-on: ubuntu-latest
Expand Down
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