Datasets examples

physio_fearconditioning/dataset_description.json

@@ -0,0 +1,4 @@
+{
+  "Name": "CALINET Bonn",
+  "BIDSVersion": "1.10.0"
+}

physio_fearconditioning/participants.json

@@ -0,0 +1,14 @@
+{
+    "participant_id": {
+        "Description": "Unique identifier for each participant"
+    },
+    "age": {
+        "Description": "Age of the participant"
+    },
+    "sex": {
+        "Description": "Sex of the participant"
+    },
+    "handedness": {
+        "Description": "Dominant hand of the participant"
+    }
+}

physio_fearconditioning/participants.tsv

@@ -0,0 +1,6 @@
+participant_id	age	sex	handedness
+sub-01	20	female	right
+sub-02	23	male	right
+sub-03	41	female	right
+sub-04	23	female	left
+sub-05	21	male	right

physio_fearconditioning/readme.txt

@@ -0,0 +1,2 @@
+Sample Dataset for PhysioBIDS
+Generated by Physio BIDS converter on 2025-07-22 09:24:10

physio_fearconditioning/sub-01/ses-01/beh/sub-01_ses-01_task-FearAcquisition_beh.json

@@ -0,0 +1,21 @@
+{
+  "TaskName": "Fear Acquisition",
+  "TaskDescription": "Differential Fear Conditioning - Fear Acquisition",
+  "Instructions": "<Task Instructions>",
+  "CogAtlasID": "https://www.cognitiveatlas.org/task/id/trm_5023ef8eab626/",
+  "CogPOID": "http://wiki.cogpo.org/index.php?title=Classical_Conditioning_Paradigm",
+  "InstitutionName": "Uni. Bonn",
+  "InstitutionAddress": "Bonn, Germany",
+  "SOA": 7.5,
+  "StimulusPresentation": {
+    "OperatingSystem": "Linux Ubuntu 18.04.5",
+    "SoftwareName": "Psychtoolbox",
+    "ScreenDistance": 0.5,
+    "ScreenRefreshRate": 144,
+    "ScreenResolution": [1920, 1080],
+    "ScreenSize": [0.569, 0.499],
+    "USElectrodeType": "surface bar electrodes consisting of two stainless steel disks of 9 mm diameter and 30 mm spacing",
+    "USElectrodeLocation": "forearm",
+    "USStimuator": "Digitimer 7A (Welwyn Garden City, UK)"
+  }
+}

physio_fearconditioning/sub-01/ses-01/beh/sub-01_ses-01_task-FearAcquisition_events.json

@@ -0,0 +1,43 @@
+{
+    "onset": {
+        "LongName": "Onset",
+        "Description": "Stimulus onset",
+        "Units": "second"
+    },
+    "duration": {
+        "LongName": "Duration",
+        "Description": "Stimulus duration",
+        "Units": "second"
+    },
+    "event_type": {
+        "LongName": "Event Type",
+        "Description": "Event type as defined in abstract terms",
+        "Levels": {
+            "CS+": "Conditioned stimulus coupled with US",
+            "CS-": "Conditioned stimulus never coupled with US",
+            "US": "Unconditioned stimulus",
+            "block_start": "Start of trial block",
+            "block_end": "End of trial block"
+        }
+    },
+    "stimulus_name": {
+        "LongName": "Identifier",
+        "Description": "Stimulus identifier",
+        "Levels": {
+            "diamond": "A diamond with 5 degrees visual angle",
+            "square": "A square with 5 degrees visual angle",
+            "shock": "An electric shock",
+            "block_start": "Start of trial block",
+            "block_end": "End of trial block"
+        }
+    },
+    "task_name": {
+        "LongName": "Name of the task",
+        "Description": "Name of the task",
+        "Levels": {
+            "habituation": "Fear habituation task",
+            "acquisition": "Fear acquisition task",
+            "extinction": "Fear extinction task"
+        }
+    }
+}

physio_fearconditioning/sub-01/ses-01/beh/sub-01_ses-01_task-FearAcquisition_events.tsv

@@ -0,0 +1,29 @@
+onset	duration	event_type	stimulus_name	task_name
+17.594	15.0	block_start	block_start	habituation
+32.594	8.0	CS+	diamond	habituation
+49.093	8.0	CS-	square	habituation
+64.343	8.0	CS+	diamond	habituation
+79.842	8.0	CS-	square	habituation
+96.091	8.0	CS-	square	acquisition
+111.094	8.0	CS-	square	acquisition
+128.094	8.0	CS+	diamond	acquisition
+135.594	0.5	US	shock	acquisition
+143.843	8.0	CS-	square	acquisition
+159.093	8.0	CS+	diamond	acquisition
+166.593	0.5	US	shock	acquisition
+175.842	8.0	CS+	diamond	acquisition
+190.345	8.0	CS-	square	acquisition
+206.844	8.0	CS+	diamond	acquisition
+214.344	0.5	US	shock	acquisition
+221.094	8.0	CS-	square	acquisition
+236.593	8.0	CS-	square	acquisition
+253.84	8.0	CS+	diamond	acquisition
+261.34000000000003	0.5	US	shock	acquisition
+268.592	8.0	CS+	diamond	acquisition
+276.092	0.5	US	shock	acquisition
+284.595	8.0	CS-	square	acquisition
+301.595	8.0	CS+	diamond	acquisition
+309.095	0.5	US	shock	acquisition
+317.094	8.0	CS-	square	acquisition
+333.844	8.0	CS+	diamond	acquisition
+356.844	0.0	block_end	block_end	acquisition

physio_fearconditioning/sub-01/ses-01/physio/sub-01_ses-01_recording-ecg_physio.json

@@ -0,0 +1,18 @@
+{
+    "Columns": [
+        "ecg"
+    ],
+    "Manufacturer": "Biopac Systems",
+    "ManufacturersModelName": "ECG100C",
+    "DeviceSerialNumber": "1711008598",
+    "SamplingFrequency": 2000,
+    "SoftwareVersion": "Biopac AcqKnowledge 5.0.2",
+    "StartTime": 0,
+    "PhysioType": "specified",
+    "ecg": {
+        "Description": "ECG Recording",
+        "Placement": "underneath the right clavicle, as well as the left and right costal margin",
+        "Units": "mV"
+    },
+    "ConcurrenceGroup": "concurrence_group_1"
+}