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Data and code for analysis of osteological sex differences in diet and population expansion
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people3k/TCPSexDifferences
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(1) Citation to the manuscript: This document describes the data files and R-code that accompany ``The effects of resources and population expansion on female-male protein consumption among hunter-gatherers" by Jacob Freeman, Alyssa Ahmann, Robert J. Hard, and Raymond P. Mauldin. The manuscript has been submitted to the Journal of Archaeological Science for re-review on April 11, 2025. The data used in the paper are contained in 3 data.csv files and the code to analyze the data is contained in SexDifPopResource24.v2.R. This README document describes the csv files and how to get started with the analysis. 2025 Freeman, J., A. Ahmann, R.J. Hard, R.P. Mauldin. The effects of resources and population expansion on female-male protein consumption among hunter-gatherers, Journal of Archaeological Science, Under Review. (2) Description of the files included in the repository and their relationship to the figures and tables in the manuscript Files: (i) File path: Data/TexasHGIsotopesMaleFemale.csv This file contains information on the stable isotopes of individuals buried in Central Texas and on the Texas Coastal Plain. The files is essential to reproduce the analysis presented in the main manuscript, including Figures 3, 4, 5, and 6. Site--Archaeological site name Individual ID (paper)--Provenience of individuals at a site delta13cap--delta 13C apatitive values delta13ccol--delata 13C collagen values delta15n--delata 15N collagen values C_N--collagen to nitrogen ratio MidPoint--median date of radiocarbon age on an individual or the median date of associated component for individuals PeriodName--Cultural historical time period PeriodID--Numeric ID for each cultural historical time period. Age--Estimated age of individual at time of death, as gathered by source material. sex--Estimate of male or female for individuals. U indicates unidentified. M=male, F=female. Estimated Latitude--Decimal degrees north, obscured Estimated Longitude--Decimal degrees west, obscured Body part--Body part (teeth or bone) used for radiocarbon dating and isotope analysis. Source--source of data Setting--Central Texas =CTx, Coastal Plain=TCP Setting2--Id of inland, riverine and coastal ecosystems (ii) File path: Data/TCPPerCap.csv This files contains the time-series of the per capita growth rates of all simulated KDEs, the mean KDE, and per capita growth rate of the mean KDE. The file is essential to reproduce Figures 4 and 6 in the main manuscript and Figures 2 and 3 in the Supporting Material. This file is for those who do not want to reproduce the full analysis of archaeological radiocarbon based on the raw data discussed below. calBP--30 year time-steps in cal BP. PeriodID--Cultural historical time period PeriodID2--Numeric ID for each cultural historical time period. v1-v200: The per capita growth rate of each KDE in 30 year intervals MKDE--The mean value of the 200 KDEs at each 30 year time-step PerCap--The per capita growth rate of the mean KDE (iii) File path: Data/FinalRCDTexas3.csv This file contains all radiocarbon ages associated with archaeological remains collected from Central Texas and the Texas Coastal Plain. This file is essential to reproduce TCPPerCap.csv and, ultimately, Figures 4 and 6 in the main manuscript and Figures 2 and 3 in the Supporting Material. These data are provided for researchers interested in reproducing the KDEs used in the study and engaging in their own analysis. Latitude-decimal degrees north Longitude-decimal degrees west Site Name--name of archaeological site Trinomial--unique trinomial for each site Assay No.--unique id for lab and each radiocarbon sample Provenience--provenience of dated material if known Feature Type--archaeological feature from which material was recovered Material--material dated Taxa dated-species or genera of data material Human--yes or no. yes indicates human remains dated Age-- radiocarbon age Error--standard deviation of raw radiocarbon age Corrected/Raw Corrected/Normalized 14C age Corrected/Normalized Age Delta 13C Delta 13C source Raw/Measured Age Raw/Measured Age AMS or Radiometric Comments Reference Region--Central Texas =CTx, Coastal Plain=TCP Zone--Inland, riverine or coastal ecosystems (3)The code to analyze the data is contained in SexDifPopResource24.v2.R. The analysis was run in "R version 4.2.2 (2022-10-31 ucrt)" with the Rstudio integrated development environment version ``2023.06.0 Build 421." (4) Getting started working with the project: To begin working with the data, (i) open SexDifPopResource24.v2.R., (ii) install and load all of the relevant packages at the beginning of the document, and (iii) follow the comments to begin reproducing the results reported in the manuscript.
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