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@readdy ReaDDy

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    14 repositories

    • readdy

      Public
      Python / C++ based particle reaction-diffusion simulator
      pythoncplusplussimulation
      pythoncplusplussimulationparticlesreaction-diffusion
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •13•61•17•0•Updated Mar 29, 2026Mar 29, 2026

    • readdy_learn

      Public
      learn reactions from data
      Jupyter Notebook
      •
      GNU Lesser General Public License v3.0
      •3•9•0•0•Updated Oct 22, 2024Oct 22, 2024

    • readdy.github.io

      Public
      ReaDDy documentation
      HTML
      •
      Other
      •0•1•0•0•Updated Oct 14, 2021Oct 14, 2021

    • readdy_documentation

      Public
      Jekyll source for documentation
      SCSS
      •2•3•0•0•Updated Oct 14, 2021Oct 14, 2021

    • graph

      Public
      Small C++ header-only library containing a graph data structure with flexible vertices
      C++
      •
      MIT License
      •0•4•0•0•Updated Sep 19, 2021Sep 19, 2021

    • h5rd

      Public
      lightweight hdf5 wrapper
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •0•4•0•0•Updated Sep 2, 2021Sep 2, 2021

    • readdyviewer

      Public
      C++
      •
      GNU Lesser General Public License v3.0
      •0•3•0•0•Updated Aug 25, 2021Aug 25, 2021

    • readdy_tutorials

      Public
      Example notebooks to demonstrate the usage of readdy
      Jupyter Notebook
      •1•2•0•0•Updated Dec 11, 2020Dec 11, 2020

    • custom-integrator-example

      Public
      Demonstrate how to build a custom integrator for ReaDDy
      Python
      •0•0•0•0•Updated Feb 15, 2019Feb 15, 2019

    • readdy2_publication_data

      Public
      0•0•0•0•Updated Aug 1, 2018Aug 1, 2018

    • readdy_java

      Public
      This library allows to do particle-based reaction-diffusion simulations.
      Java
      •3•11•2•0•Updated Nov 27, 2014Nov 27, 2014

    • readdy-sim-StarterKit

      Public
      This starter kit contains templates and necessary binaries to start simulating right away.
      Shell
      •1•3•0•0•Updated Aug 22, 2014Aug 22, 2014

    • readdy-input-topology-generator

      Public
      The readdy-input-topology-generator (Topology Generator) creates input topology files for particles and groups, given a file how many particle and how many grou…
      Java
      •1•2•0•0•Updated Aug 21, 2014Aug 21, 2014

    • readdy-VMD-visualizer

      Public
      This tool parses ReaDDy output trajectories and creates an VMD readable output and a VMD .tcl script to visualize it.
      Java
      •0•1•0•0•Updated Jul 30, 2014Jul 30, 2014
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