Skip to content
Change the repository type filter

All

    Repositories list

    • qupath

      Public
      QuPath - Open-source bioimage analysis for research
      Java
      GNU General Public License v3.0
      3381.3k281Updated Apr 24, 2026Apr 24, 2026
    • Reusable JavaFX tools for QuPath (and beyond)
      Java
      Apache License 2.0
      3610Updated Apr 23, 2026Apr 23, 2026
    • A QuPath extension for working with Deep Java Library (https://djl.ai)
      Java
      Apache License 2.0
      71000Updated Apr 23, 2026Apr 23, 2026
    • Template to help create a new QuPath extension
      Java
      142100Updated Apr 23, 2026Apr 23, 2026
    • A QuPath extension to help with learning the software
      Java
      Apache License 2.0
      3101Updated Apr 23, 2026Apr 23, 2026
    • A Java library to link QuPath and ImgLib2
      Java
      Apache License 2.0
      1100Updated Apr 23, 2026Apr 23, 2026
    • GitHub pages site
      SCSS
      MIT License
      5200Updated Apr 22, 2026Apr 22, 2026
    • The catalog containing QuPath extensions developed by the QuPath team
      Apache License 2.0
      3120Updated Apr 8, 2026Apr 8, 2026
    • A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)
      Java
      Apache License 2.0
      3621Updated Mar 31, 2026Mar 31, 2026
    • Support for parsing the BioImage Model Zoo spec in Java
      Java
      MIT License
      2020Updated Mar 30, 2026Mar 30, 2026
    • QuPath extension to work with images through OMERO's APIs
      Java
      Apache License 2.0
      2930Updated Mar 27, 2026Mar 27, 2026
    • A QuPath extension to combine TIFF images
      Java
      Apache License 2.0
      0100Updated Mar 16, 2026Mar 16, 2026
    • 0000Updated Mar 16, 2026Mar 16, 2026
    • Groovy
      3000Updated Mar 9, 2026Mar 9, 2026
    • Java
      Apache License 2.0
      2641Updated Mar 2, 2026Mar 2, 2026
    • QuPath documentation
      Python
      252271Updated Mar 2, 2026Mar 2, 2026
    • qubalab

      Public
      Lab for quantitative bioimage analysis experiments in Python
      Python
      Apache License 2.0
      51900Updated Feb 16, 2026Feb 16, 2026
    • A simple JavaFX Javadoc viewer
      Java
      Apache License 2.0
      1000Updated Feb 11, 2026Feb 11, 2026
    • QuPath extension to work with images through OMERO's web API
      Java
      GNU General Public License v3.0
      111080Updated Feb 10, 2026Feb 10, 2026
    • The official QuPath extension for InstanSeg
      Java
      Apache License 2.0
      52970Updated Jan 21, 2026Jan 21, 2026
    • A manager for catalogs and extensions.
      Java
      Apache License 2.0
      2000Updated Jan 12, 2026Jan 12, 2026
    • actions

      Public
      GitHub actions for QuPath and related repositories
      Shell
      Apache License 2.0
      1000Updated Jan 7, 2026Jan 7, 2026
    • QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
      Java
      Apache License 2.0
      92811Updated Dec 3, 2025Dec 3, 2025
    • Jupyter Notebook
      Apache License 2.0
      1700Updated Nov 5, 2025Nov 5, 2025
    • QuPath extension to interactively align images
      Java
      GNU General Public License v3.0
      102710Updated Aug 7, 2025Aug 7, 2025
    • A QuPath extension for linking up to Python via Py4J (https://www.py4j.org)
      Java
      Apache License 2.0
      3100Updated Jul 28, 2025Jul 28, 2025
    • Gradle plugins to help create QuPath extensions
      Java
      Apache License 2.0
      1200Updated Jul 2, 2025Jul 2, 2025
    • QuPath extension using JPen for graphics tablet input
      Java
      GNU General Public License v3.0
      4100Updated Jul 2, 2025Jul 2, 2025
    • A QuPath extension to run the Liverquant algorithm
      Java
      Apache License 2.0
      1000Updated Jul 2, 2025Jul 2, 2025
    • A QuPath extension to help with making screenshots
      Java
      Apache License 2.0
      2100Updated Jul 2, 2025Jul 2, 2025
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.