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    • Lab Homepage
      CSS
      Other
      0000Updated May 3, 2026May 3, 2026
    • Very minimal implementation of DEER
      Jupyter Notebook
      MIT License
      2900Updated Apr 11, 2026Apr 11, 2026
    • Official repo for "A Unifying Framework for Parallelizing Sequential Models with Linear Dynamical Systems"
      Python
      MIT License
      1600Updated Apr 3, 2026Apr 3, 2026
    • Template for PhD Dissertations at Stanford University. Adapted from classicthesis by Andre Miede
      TeX
      GNU General Public License v2.0
      0000Updated Mar 18, 2026Mar 18, 2026
    • Official repo for "Predictability Enables Parallelization of Nonlinear State Space Models" by Gonzalez*, Kozachkov*, et al. Published NeurIPS '25.
      Python
      MIT License
      2200Updated Mar 6, 2026Mar 6, 2026
    • elk

      Public
      Scalable and Stable Parallelization of Nonlinear RNNS
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      23000Updated Mar 6, 2026Mar 6, 2026
    • Parallelizing MCMC across the sequence length via Newton's method.
      Python
      BSD 3-Clause "New" or "Revised" License
      23200Updated Mar 2, 2026Mar 2, 2026
    • gpslds

      Public
      Project repo for gpSLDS
      Jupyter Notebook
      31900Updated Jan 12, 2026Jan 12, 2026
    • Tucker decompositions with normalization constraints
      Jupyter Notebook
      MIT License
      0100Updated Jan 12, 2026Jan 12, 2026
    • sing

      Public
      SING: SDE Inference via Natural Gradients
      Python
      MIT License
      43600Updated Dec 9, 2025Dec 9, 2025
    • A PyTorch implementation of the PPSeq model with EM fitting and GPU acceleration.
      Jupyter Notebook
      2402Updated Oct 21, 2025Oct 21, 2025
    • Code for the paper "Informed Correctors for Discrete Diffusion Models"
      Python
      0110Updated Sep 9, 2025Sep 9, 2025
    • ssm

      Public
      Bayesian learning and inference for state space models
      Jupyter Notebook
      MIT License
      229695321Updated May 9, 2025May 9, 2025
    • S5

      Public
      Python
      MIT License
      7431800Updated Jan 8, 2025Jan 8, 2025
    • Jupyter notebooks from our weekly (or so) hackathons
      Jupyter Notebook
      41100Updated Dec 3, 2024Dec 3, 2024
    • elk-torch

      Public
      Parallelizing nonlinear dynamics--in PyTorch
      Python
      MIT License
      1300Updated Dec 2, 2024Dec 2, 2024
    • elk-dev

      Public
      Scalable and Stable Parallelization of Nonlinear RNNS
      Python
      BSD 3-Clause "New" or "Revised" License
      2200Updated Nov 26, 2024Nov 26, 2024
    • nm-rnn

      Public
      Work in progress...
      Jupyter Notebook
      1800Updated Oct 23, 2024Oct 23, 2024
    • forward

      Public
      Port Forwarding Utility (Linderman Lab edition)
      Shell
      MIT License
      29100Updated Oct 18, 2024Oct 18, 2024
    • salt

      Public
      Code accompanying "Switching Autoregressive Low-Rank Tensor Models", Lee et al., NeurIPS, 2023.
      Jupyter Notebook
      Apache License 2.0
      1010Updated Sep 30, 2024Sep 30, 2024
    • State Space Models library in JAX
      Jupyter Notebook
      MIT License
      109201Updated Sep 14, 2024Sep 14, 2024
    • fos

      Public
      Semi-NMF for Fos data
      Jupyter Notebook
      MIT License
      2200Updated Jul 9, 2024Jul 9, 2024
    • ssm-jax

      Public
      Bayesian learning and inference for state space models (SSMs) using Google Research's JAX as a backend
      Jupyter Notebook
      MIT License
      662144Updated Jun 17, 2024Jun 17, 2024
    • Python
      MIT License
      21000Updated Jan 12, 2024Jan 12, 2024
    • Fast samplers for Neyman-Scott processes.
      Jupyter Notebook
      MIT License
      0911Updated Nov 28, 2023Nov 28, 2023
    • PPSeq.jl

      Public
      Neyman-Scott point process model to identify sequential firing patterns in high-dimensional spike trains
      Julia
      MIT License
      157201Updated Jul 18, 2023Jul 18, 2023
    • Whole-lifespan modelling of physical behavior
      Jupyter Notebook
      MIT License
      0240Updated Jun 25, 2023Jun 25, 2023
    • warhmm

      Public
      Python
      MIT License
      21100Updated Feb 27, 2023Feb 27, 2023
    • sixo

      Public
      Python
      MIT License
      0400Updated Nov 19, 2022Nov 19, 2022
    • ssm-docs

      Public
      Docs for SSM
      Jupyter Notebook
      0200Updated Oct 4, 2022Oct 4, 2022
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