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@ipdgc International Parkinson's Disease Genomics Consortium

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    24 repositories

    • GP2-post-GWAS-analysis

      Public
      IPDGC x GP2 Hackathon 2021 Project - post-GWAS analysis
      HTML
      •1•0•0•0•Updated Nov 22, 2022Nov 22, 2022

    • GP2-visualise-longitudinal-variant-effects

      Public
      IPDGC x GP2 Hackathon 2021 Project - Visualize longitudinal and cross-sectional variant effects
      R
      •6•1•0•0•Updated Nov 22, 2022Nov 22, 2022

    • GP2-Variant-Interaction-Pipeline

      Public
      IPDGC x GP2 Hackathon 2021 Project - Variant Interaction Pipeline
      R
      •0•0•0•0•Updated Nov 22, 2022Nov 22, 2022

    • GP2-network-generation

      Public
      IPDGC x GP2 Hackathon 2021 Project - Network generation and visualization
      Jupyter Notebook
      •0•0•0•0•Updated Nov 21, 2022Nov 21, 2022

    • Colocalization-Pipeline

      Public
      iPDGC Hackathon 2021 Project
      R
      •1•2•0•0•Updated Nov 21, 2022Nov 21, 2022

    • GP2-pathway-enrichment-pipeline

      Public
      IPDGC x GP2 Hackathon 2021 Project - Pathway and cell type enrichment pipeline
      Jupyter Notebook
      •1•0•0•0•Updated Nov 21, 2022Nov 21, 2022

    • IPDGC-Trainees

      Public
      This repo contains the code from the various scripts from the trainee-led projects within IPDGC
      Jupyter Notebook
      •9•5•0•0•Updated Apr 21, 2022Apr 21, 2022

    • GP2-cohort-tracker

      Public
      IPDGC x GP2 Hackathon 2021 Project - Cohort Tracker for GP2
      Python
      •0•2•0•0•Updated Nov 8, 2021Nov 8, 2021

    • PD-Wiki-Loci

      Public
      Working on PD wiki loci, IPDGC Hackathon
      R
      •3•0•0•0•Updated May 18, 2021May 18, 2021

    • pdgsc

      Public
      PDGSC QC and analysis scripts
      R
      •2•0•0•0•Updated Jan 12, 2021Jan 12, 2021

    • Mendelian-Randomization

      Public
      2•1•0•0•Updated Sep 13, 2020Sep 13, 2020

    • Online-PD-Risk-Score

      Public
      Calculator for PD risk scores, IPDGC Hackathon
      Jupyter Notebook
      •0•0•0•0•Updated Jun 10, 2020Jun 10, 2020

    • Sentiment-in-PD-Progression

      Public
      Web scraping Twitter for sentiment analysis in PD progression, IPDGC Hackathon
      Jupyter Notebook
      •2•2•0•0•Updated Jun 10, 2020Jun 10, 2020

    • Automate-with-Python

      Public
      “Automate the boring stuff with Python” for Population Genetics, IPDGC Hackathon
      Python
      •0•1•0•0•Updated Jun 10, 2020Jun 10, 2020

    • PD-Project-Tracker

      Public
      Creating a project tracker for IPDGC, IPDGC Hackathon
      R
      •1•0•0•0•Updated Jun 10, 2020Jun 10, 2020

    • Docker-Coexpression-Networks

      Public
      Generating coexpression gene network webpages using Docker technology, an IPDGC Hackathon 2019 project
      HTML
      •0•0•0•0•Updated Dec 18, 2019Dec 18, 2019

    • Pathway-Enrichment-Analysis-Visualization

      Public
      Visualize the results of pathway enrichment analyses, an IPDGC Hackathon 2019 Project
      0•0•0•0•Updated Dec 9, 2019Dec 9, 2019

    • iPDGC-PDMR-Portal

      Public
      iPDGC Parkinson Disease Mendelian Randomization Portal
      R
      •2•3•1•0•Updated Oct 17, 2019Oct 17, 2019

    • GenoML-Brief-Intro

      Public
      The briefest intro to our genomics focused autoML pipeline
      1•1•0•0•Updated Aug 30, 2019Aug 30, 2019

    • pdpmGWAS-browser

      Public
      PD Progression Meta-GWAS Browser
      R
      •1•0•0•0•Updated May 9, 2019May 9, 2019

    • genetic-risk-score

      Public
      0•0•0•0•Updated Apr 22, 2019Apr 22, 2019

    • General-Info

      Public
      General info regarding the IPDGC, its GitHub site plus current and past projects
      0•2•0•0•Updated Mar 21, 2019Mar 21, 2019

    • Manhattan-Plotter

      Public
      This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3
      R
      •6•13•1•0•Updated Mar 14, 2019Mar 14, 2019

    • iGraph-Networks

      Public
      Scripting to run iGraph networks
      R
      •1•0•0•0•Updated Mar 13, 2019Mar 13, 2019
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