Repositories list

• proteopy

  Public
  An AnnData-based framework for integrated proteomics analysis

  pythondata-analysisproteomics+ 3

  pythondata-analysisproteomicsmass-spectrometryproteoformsanndata

  Python

  •

  Apache License 2.0

  •22 forks•2323 stars•1414 issues•11 pull request•Updated May 4, 2026May 4, 2026

• atacseq_snakemake_new

  Public
  Bulk ATAC-seq Snakemake workflow: Compatible with local and LSF-based HPC systems

  snakemakepipelineepigenetics+ 3

  snakemakepipelineepigeneticsatac-seqchromatin-accessibiityatacseq-pipeline

  Python

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 4, 2026May 4, 2026

• agent-skills

  Public
  A collection of skills for LLM agents (Claude Code and others).

  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 9, 2026Apr 9, 2026

• rnaseq_snakemake

  Public
  Bulk RNA-seq Snakemake workflow: Compatible with local and LSF-based HPC systems

  rna-seqsnakemakepipeline+ 2

  rna-seqsnakemakepipelineepigeneticsrna-seq-pipeline

  HTML

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 28, 2026Mar 28, 2026

• proteosim

  Public
  Reference repository for the course "Proteomics and package development using python" WS25/26, Molecular Biotechnology

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 24, 2025Nov 24, 2025

• advanced-python_course

  Public
  Advanced python course with the aim of teaching package development, reproducible coding practices, documentation, version control and collaborative working wit…

  Jupyter Notebook

  •

  MIT License

  •00 forks•55 stars•00 issues•00 pull requests•Updated Nov 24, 2025Nov 24, 2025

• snRNA_spatial_labeltransfer

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 9, 2024Oct 9, 2024

• Rapid-CNS2_sh

  Public
  Neuropathology Heidelberg Rapid-CNS2 pipeline (bash + docker)

  R

  •33 forks•11 star•00 issues•00 pull requests•Updated Apr 6, 2024Apr 6, 2024