Repositories list

• UimaBioC

  Public archive
  Simple interaction code to define the BioC as a UIMA type and provide support for it's use in text mining applications based on the CleartTk UIMA system.

  Java

  •

  Apache License 2.0

  •33 forks•00 stars•00 issues•00 pull requests•Updated Feb 23, 2020Feb 23, 2020

• ske-utils

  Public archive
  Utilities for bmkeg libraries (includes file, zip, spring and other miscellaneous tools).

  Java

  •44 forks•11 star•00 issues•00 pull requests•Updated Feb 11, 2020Feb 11, 2020

• SciKnowEngine.github.io

  Public archive
  Website for USC ISI Scientific Knowledge Engineering group

  HTML

  •

  Apache License 2.0

  •1313 forks•11 star•00 issues•00 pull requests•Updated Jan 21, 2020Jan 21, 2020

• fastai

  Public archive
  Demonstration / test code to run fastai models

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 18, 2019Aug 18, 2019

• lapdftext

  Public archive
  LA-PDFText is a system for extracting accurate text from PDF-based research articles (and an interface to be able to improve performance where needed). The syst…

  Java

  •

  GNU General Public License v3.0

  •5353 forks•1515 stars•00 issues•00 pull requests•Updated Mar 21, 2019Mar 21, 2019

• ske-parent

  Public archive
  This is where we manage maven dependencies, versions and repositories for all our development projects. This serves as the parent for all subsequent work.

  2525 forks•00 stars•00 issues•00 pull requests•Updated Mar 20, 2019Mar 20, 2019

• sciknowmap

  Public archive
  Python

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jan 28, 2019Jan 28, 2019

• ro-biocuration2019

  Public archive
  Research Object describing source code and data for Burns et al (2019)

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jan 3, 2019Jan 3, 2019

• Molecular_Interaction_Evidence_Fragment_Corpus

  Public archive
  Other

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 8, 2018Nov 8, 2018

• evidx-figureAnalysis

  Public archive
  Frameworks for the analysis of figures from scientific papers expressed as PDF files.

  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 25, 2018Sep 25, 2018

• docker-bioscholar

  Public archive
  Docker image of the BioScholar web application. Permits the system to be deployed anywhere.

  Java

  •7373 forks•00 stars•00 issues•00 pull requests•Updated Aug 3, 2018Aug 3, 2018

• ro-semSci2018

  Public archive
  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 23, 2018Jul 23, 2018

• etk

  Public archive
  Extraction Toolkit

  Julia

  •

  MIT License

  •4848 forks•00 stars•00 issues•00 pull requests•Updated Jul 18, 2018Jul 18, 2018

• ro-semSci2017

  Public archive
  Research Object Implementation for submission to ISWC 2017

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 18, 2018Jul 18, 2018

• SciKnowGraph

  Public archive
  Scientific Knowledge Graphs are applications of Knowledge Graph methods (driven currently from the work of DIG group at ISI, http://dig.isi.edu/). We cover meth…

  semantic-webontologyontology-design-patterns+ 1

  semantic-webontologyontology-design-patternsscientific-knowledge-engineering

  33 forks•11 star•00 issues•00 pull requests•Updated Jun 27, 2018Jun 27, 2018

• kefed.io

  Public archive
  Knowledge Engineering from Experimental Design

  JavaScript

  •

  MIT License

  •00 forks•22 stars•1313 issues•00 pull requests•Updated Jun 26, 2018Jun 26, 2018

• docker_bioscholar

  Public archive
  Docker image of the BioScholar web application. Permits the system to be deployed anywhere.

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 31, 2018May 31, 2018

• evidx-alignment

  Public archive
  MIT License

  •55 forks•00 stars•00 issues•00 pull requests•Updated Mar 29, 2018Mar 29, 2018

• dig-alignment

  Public archive
  Code to do feature alignment in dig

  PHP

  •

  Apache License 2.0

  •1717 forks•00 stars•00 issues•00 pull requests•Updated Jan 11, 2018Jan 11, 2018

• vpdmf-bioc

  Public archive
  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 8, 2017Dec 8, 2017

• PyBioC

  Public archive
  Python library for work with BioCreative files

  Python

  •

  Other

  •1313 forks•00 stars•00 issues•00 pull requests•Updated Nov 29, 2017Nov 29, 2017

• TextAnnotationGraphs

  Public archive
  A modular annotation system that supports complex, interactive annotation graphs embedded on top of sequences of text.

  JavaScript

  •

  MIT License

  •1818 forks•00 stars•00 issues•00 pull requests•Updated Nov 11, 2017Nov 11, 2017

• kefedEditor

  Public archive
  The original KEfED editor web application, as described in Russ et al. 2011 (http://www.biomedcentral.com/1471-2105/12/351).

  Common Lisp

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 30, 2017Aug 30, 2017

• corex_topic

  Public archive
  Hierarchical topic models for sparse count data with CorEx.

  Python

  •

  Apache License 2.0

  •118118 forks•00 stars•00 issues•00 pull requests•Updated Aug 4, 2017Aug 4, 2017

• bioc-ld

  Public archive
  A Linked Data implementation of the National Library of Medicine's BioC format.

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 22, 2017Jul 22, 2017

• skeDigitalLibrary

  Public archive
  Currently, this is the legacy 'BioScholar' system encapsulated into a single project. We will evolve this tool to work within the DIG architecture.

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 1, 2017Jul 1, 2017

• CorEx

  Public archive
  CorEx or "Correlation Explanation" constructs a hierarchy of maximally informative representations of complex data.

  Python

  •

  GNU General Public License v2.0

  •5454 forks•00 stars•00 issues•00 pull requests•Updated Jun 2, 2017Jun 2, 2017

• kefedProject

  Public archive
  Organizing project for work on the Knowledge Engineering from Experimental Design (KEfED) methodology.

  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 1, 2017Jun 1, 2017

• digapp-ht

  Public archive
  Copy of dig-polymer for new data set

  HTML

  •

  Apache License 2.0

  •99 forks•00 stars•00 issues•00 pull requests•Updated Mar 22, 2017Mar 22, 2017

• ooevvTools

  Public archive
  VPDMf-based data access object for the Ontology of Experimental Variables and Values (OoEVV)

  Java

  •11 fork•00 stars•00 issues•00 pull requests•Updated Dec 19, 2016Dec 19, 2016