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    • HTML
      MIT License
      111000Updated Apr 23, 2026Apr 23, 2026
    • Jupyter Notebook
      0000Updated Apr 21, 2026Apr 21, 2026
    • DigitalTwinDemographics

      Public
      A Sciduct app for analyzing population digital twins to provide statistics over custom groupings and geographic regions
      Jupyter Notebook
      Apache License 2.0
      0010Updated Apr 14, 2026Apr 14, 2026
    • Right size the list of variants.
      Jupyter Notebook
      MIT License
      0000Updated Mar 30, 2026Mar 30, 2026
    • Driving component for the SIMBA system.
      Python
      Apache License 2.0
      0000Updated Mar 12, 2026Mar 12, 2026
    • IDOBE

      Public
      Infectious Disease Outbreak forecasting Benchmark Ecosystem
      Jupyter Notebook
      0210Updated Feb 18, 2026Feb 18, 2026
    • FIELD: High-Resolution, US-scale Digital Similar of Interacting Livestock, Wild Birds, and Human Ecosystems for Multi-host Epidemic Spread
      Jupyter Notebook
      Apache License 2.0
      0000Updated Feb 15, 2026Feb 15, 2026
    • Distributed and extensible data storage for SIMBA
      Python
      Apache License 2.0
      0000Updated Feb 13, 2026Feb 13, 2026
    • Jupyter Notebook
      0000Updated Feb 13, 2026Feb 13, 2026
    • SciducTainer

      Public template
      Minimal example (template) repo which includes files to interface with Sciduct job service.
      Python
      Apache License 2.0
      0000Updated Jan 15, 2026Jan 15, 2026
    • MultiPub

      Public
      Multi-Publication Latex Formatter with Cover Page Option
      TeX
      0000Updated Dec 12, 2025Dec 12, 2025
    • Code and pipeline for invasive species interventions work.
      Python
      Apache License 2.0
      0000Updated Dec 5, 2025Dec 5, 2025
    • Digital similar for HPAI software
      Python
      GNU General Public License v3.0
      1001Updated Nov 20, 2025Nov 20, 2025
    • Test code for LLM squad stuff
      Python
      MIT License
      0000Updated Nov 14, 2025Nov 14, 2025
    • A git pre commit hook used to maintain license and copyright information in source files.
      Python
      Apache License 2.0
      0000Updated Nov 11, 2025Nov 11, 2025
    • EpiHiper

      Public
      C++
      MIT License
      2620Updated Oct 14, 2025Oct 14, 2025
    • Python
      Apache License 2.0
      1000Updated Oct 3, 2025Oct 3, 2025
    • HPC workflow helpers for Slurm clusters
      Python
      MIT License
      1000Updated Sep 22, 2025Sep 22, 2025
    • Tree sitter grammar for Epidemic Simulator Language (ESL)
      JavaScript
      MIT License
      0000Updated Sep 11, 2025Sep 11, 2025
    • Python
      2000Updated Sep 10, 2025Sep 10, 2025
    • Python
      0000Updated Sep 3, 2025Sep 3, 2025
    • Python
      0000Updated Sep 3, 2025Sep 3, 2025
    • PatchSim

      Public
      Code for simulating the metapopulation SEIR model. Sample network for US national simulation included.
      Jupyter Notebook
      MIT License
      162520Updated Sep 3, 2025Sep 3, 2025
    • ESCAPE: Epidemic Simulator Compiler and Programming Environment
      Python
      MIT License
      0210Updated Aug 4, 2025Aug 4, 2025
    • VariantIQ

      Public
      Suite of tools for evaluating performance and intelligence in variant callers.
      Python
      Apache License 2.0
      1001Updated Jul 7, 2025Jul 7, 2025
    • EXCEADS deployments
      Shell
      0000Updated Jun 9, 2025Jun 9, 2025
    • A dataset of SQUAD v2 style questions and answers created from WHO's Covid-19 reports.
      Python
      MIT License
      0000Updated May 19, 2025May 19, 2025
    • COVID-19 Scenario Modeling Hub
      HTML
      MIT License
      9000Updated May 12, 2025May 12, 2025
    • data.USGS

      Public
      HTML
      Creative Commons Zero v1.0 Universal
      0000Updated May 9, 2025May 9, 2025
    • Apache License 2.0
      0000Updated May 8, 2025May 8, 2025
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