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@ManchesterBioinference Manchester Bioinference Group

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    20 repositories

    • bioinference_website

      Public
      Website for Bioinference Research Group at UoM
      TeX
      •
      MIT License
      •3•0•0•0•Updated Apr 24, 2026Apr 24, 2026

    • eveSimulation

      Public
      Repository for eveSimulation project from local workspace
      Python
      •0•0•0•0•Updated Mar 9, 2026Mar 9, 2026

    • mRNA_LLM_decay

      Public
      Using LLMs to understand mRNA decay features
      HTML
      •1•0•0•0•Updated Dec 9, 2025Dec 9, 2025

    • mRNA_LLM

      Public
      Using LLMs to understand mRNA features
      HTML
      •1•0•1•0•Updated Dec 9, 2025Dec 9, 2025

    • metaAPA

      Public
      R
      •0•0•0•0•Updated Sep 25, 2025Sep 25, 2025

    • CellPie

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Mar 18, 2025Mar 18, 2025

    • GPcounts

      Public
      Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
      Jupyter Notebook
      •
      Apache License 2.0
      •3•24•1•2•Updated Feb 24, 2025Feb 24, 2025

    • GP_Transcription_Dynamics

      Public
      Python
      •1•1•0•0•Updated Sep 10, 2024Sep 10, 2024

    • burstInfer

      Public
      Using a dynamic memory-adjusted Hidden Markov Model to infer global and single-cell transcriptional parameters
      Python
      •
      Apache License 2.0
      •1•6•2•0•Updated Mar 12, 2024Mar 12, 2024

    • DEtime

      Public
      R package for two-sample time series analysis using Gaussian process methods
      HTML
      •0•9•0•0•Updated Feb 1, 2024Feb 1, 2024

    • ScaledPoisson

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 16, 2023May 16, 2023

    • BranchedGP

      Public
      Branching Gaussian process
      Jupyter Notebook
      •
      Apache License 2.0
      •8•30•9•12•Updated May 14, 2023May 14, 2023

    • IntegratingATAC-RNA-HiC

      Public
      scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
      Jupyter Notebook
      •2•26•0•0•Updated Nov 17, 2022Nov 17, 2022

    • Systems-Immunology-Cytokine-Responses

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 9, 2022Aug 9, 2022

    • GPosc

      Public
      Jupyter Notebook
      •2•1•0•0•Updated May 25, 2022May 25, 2022

    • GrandPrix

      Public
      GrandPrix
      Jupyter Notebook
      •
      Apache License 2.0
      •4•16•1•0•Updated May 27, 2019May 27, 2019

    • Scasat

      Public
      Scasat is a single cell ATAC-seq preprocessing and analysis pipeline
      pipelinesatac-seqsingle-cell
      pipelinesatac-seqsingle-cell
      Jupyter Notebook
      •6•35•0•0•Updated Feb 27, 2019Feb 27, 2019

    • EP_Bayes

      Public
      Bayesian inference of enhancer-promoter links
      Python
      •2•2•0•0•Updated Jan 10, 2017Jan 10, 2017

    • GPosc260716

      Public
      Identifying stochastic oscillations in single cell live imaging time series using Gaussian processes
      MATLAB
      •
      Artistic License 2.0
      •1•0•0•0•Updated Dec 8, 2016Dec 8, 2016

    • cjBitSeq_benchmarking

      Public
      benchmarking experiments for cjBitSeq
      R
      •0•1•0•0•Updated Aug 1, 2015Aug 1, 2015
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