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    • Website for Bioinference Research Group at UoM
      TeX
      MIT License
      3000Updated Apr 24, 2026Apr 24, 2026
    • Repository for eveSimulation project from local workspace
      Python
      0000Updated Mar 9, 2026Mar 9, 2026
    • Using LLMs to understand mRNA decay features
      HTML
      1000Updated Dec 9, 2025Dec 9, 2025
    • mRNA_LLM

      Public
      Using LLMs to understand mRNA features
      HTML
      1010Updated Dec 9, 2025Dec 9, 2025
    • metaAPA

      Public
      R
      0000Updated Sep 25, 2025Sep 25, 2025
    • CellPie

      Public
      Jupyter Notebook
      GNU General Public License v3.0
      1200Updated Mar 18, 2025Mar 18, 2025
    • GPcounts

      Public
      Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
      Jupyter Notebook
      Apache License 2.0
      32412Updated Feb 24, 2025Feb 24, 2025
    • Python
      1100Updated Sep 10, 2024Sep 10, 2024
    • Using a dynamic memory-adjusted Hidden Markov Model to infer global and single-cell transcriptional parameters
      Python
      Apache License 2.0
      1620Updated Mar 12, 2024Mar 12, 2024
    • DEtime

      Public
      R package for two-sample time series analysis using Gaussian process methods
      HTML
      0900Updated Feb 1, 2024Feb 1, 2024
    • Jupyter Notebook
      GNU General Public License v3.0
      0000Updated May 16, 2023May 16, 2023
    • Branching Gaussian process
      Jupyter Notebook
      Apache License 2.0
      830912Updated May 14, 2023May 14, 2023
    • scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
      Jupyter Notebook
      22600Updated Nov 17, 2022Nov 17, 2022
    • Jupyter Notebook
      0000Updated Aug 9, 2022Aug 9, 2022
    • GPosc

      Public
      Jupyter Notebook
      2100Updated May 25, 2022May 25, 2022
    • GrandPrix

      Public
      GrandPrix
      Jupyter Notebook
      Apache License 2.0
      41610Updated May 27, 2019May 27, 2019
    • Scasat

      Public
      Scasat is a single cell ATAC-seq preprocessing and analysis pipeline
      Jupyter Notebook
      63500Updated Feb 27, 2019Feb 27, 2019
    • EP_Bayes

      Public
      Bayesian inference of enhancer-promoter links
      Python
      2200Updated Jan 10, 2017Jan 10, 2017
    • Identifying stochastic oscillations in single cell live imaging time series using Gaussian processes
      MATLAB
      Artistic License 2.0
      1000Updated Dec 8, 2016Dec 8, 2016
    • benchmarking experiments for cjBitSeq
      R
      0100Updated Aug 1, 2015Aug 1, 2015
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