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@Knowledge-Graph-Hub Knowledge Graph Hub

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    44 repositories

    • kg-microbe

      Public
      knowledge-graphnamed-entity-recognitionmicrobial-genomics
      knowledge-graphnamed-entity-recognitionmicrobial-genomicsmicrobial-trait-predictionmicrobiologymetabolismtraitsphenotypesdata-modelingmicrobial-genomes
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•23•226•5•Updated Apr 20, 2026Apr 20, 2026

    • kg-registry

      Public
      A registry of Knowledge Graphs, their data sources, and the ways they fit together.
      registryknowledgegraph
      registryknowledgegraphknowledge-graphkgkg-hub
      Python
      •
      Other
      •5•25•27•0•Updated Apr 16, 2026Apr 16, 2026

    • kg-phenio

      Public
      A graph for accessing and comparing knowledge concerning phenotypes across species and genetic backgrounds.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•7•22•3•Updated Apr 14, 2026Apr 14, 2026

    • agent-alz-assistant

      Public
      Agentic AI assistant for Alzheimer's disease research with literature retrieval and knowledge synthesis
      Python
      •0•2•0•1•Updated Mar 13, 2026Mar 13, 2026

    • automate-pheno-comparisons

      Public
      Jenkins-based automation of phenotype semantic similarity on PHENIO with Semsimian.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•12•2•Updated Feb 4, 2026Feb 4, 2026

    • kg-microbe-merge

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•1•1•Updated Jan 6, 2026Jan 6, 2026

    • knowledge-graph-hub.github.io

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•8•4•0•Updated Dec 23, 2025Dec 23, 2025

    • microbe-traits-ingest

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•2•Updated Nov 24, 2025Nov 24, 2025

    • restoration_ingests

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•2•Updated Nov 24, 2025Nov 24, 2025

    • kg-alzheimers

      Public
      A knowledge graph integrating biomedical data related to Alzheimer's Disease
      Python
      •1•2•21•1•Updated Oct 8, 2025Oct 8, 2025

    • nicegui-app-copier

      Public
      Copier template for creating agentic AI assistants with NiceGUI and Claude Code CLI
      Jinja
      •0•2•0•0•Updated Oct 7, 2025Oct 7, 2025

    • .github

      Public
      Welcome to KG-Hub
      0•0•0•0•Updated Aug 25, 2025Aug 25, 2025

    • universalizer

      Public
      The KG-Hub Universalizer provides functions for knowledge graph cleanup and identifier normalization.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•3•4•0•Updated Mar 21, 2025Mar 21, 2025

    • kg-hub-containers

      Public
      Documentation and code for using containers with the KG-Hub platform.
      Dockerfile
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Mar 12, 2025Mar 12, 2025

    • uniprot2s3

      Public
      Python
      •
      MIT License
      •2•2•0•3•Updated Feb 15, 2025Feb 15, 2025

    • kg-cookiecutter

      Public
      A cookiecutter template for KG generation.
      Python
      •
      MIT License
      •1•5•1•1•Updated Jan 27, 2025Jan 27, 2025

    • kg-chat

      Public
      HTML
      •
      MIT License
      •1•8•0•1•Updated Dec 30, 2024Dec 30, 2024

    • OBOFoundry.github.io

      Public
      OBO Fork for KGs
      obofoundryknowledge-graphs
      obofoundryknowledge-graphs
      Python
      •
      Other
      •218•2•0•0•Updated Dec 6, 2024Dec 6, 2024

    • KG_Microbe_embeddings

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • NEAT-kghub-scheduler

      Public
      Scheduling utility for starting NEAT jobs for KG-Hub resources.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•2•1•Updated Jun 11, 2024Jun 11, 2024

    • kg-obo

      Public
      A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
      knowledge-graphobomonarchinitiative
      knowledge-graphobomonarchinitiativeobofoundrybiolinkontology-infrastructure
      Python
      •
      GNU General Public License v3.0
      •2•33•26•0•Updated Mar 19, 2024Mar 19, 2024

    • kg-enp

      Public
      KG-ENP: a knowledge graph for experimental natural products, based off ENPKG
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•5•0•1•Updated Jan 26, 2024Jan 26, 2024

    • kg-hub-dashboard

      Public
      Dashboard visualizations for KG-Hub projects.
      dashboard
      dashboard
      Vue
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•6•0•Updated Dec 11, 2023Dec 11, 2023

    • kg-bacdive

      Public archive
      Knowledge graph construction for BacDive data
      Jupyter Notebook
      •0•1•0•1•Updated Oct 27, 2023Oct 27, 2023

    • kg-covid-19

      Public
      An instance of KG Hub to produce a knowledge graph for COVID-19 response.
      monarchinitiative
      monarchinitiative
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •26•84•98•5•Updated Aug 3, 2023Aug 3, 2023

    • kg-idg

      Public
      A Knowledge Graph to Illuminate the Druggable Genome
      knowledge-graphmonarchinitiativebiolink
      knowledge-graphmonarchinitiativebiolinkdrug-target-interactions
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•9•6•0•Updated May 30, 2023May 30, 2023

    • kg-ibd

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated May 10, 2023May 10, 2023

    • knowledge-graph-hub-support

      Public
      Issues, support, and discussion for KG-Hub. Covers tools, infrastructure, and graph projects.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•7•18•0•Updated May 5, 2023May 5, 2023

    • kg-example

      Public template
      Example repository for KG-Hub projects. Provides examples for downloading sources, transforming them, and merging them into knowledge graphs.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•4•1•0•Updated May 3, 2023May 3, 2023

    • kg-covid-19-dashboard

      Public
      Dashboard for KG-COVID-19
      dashboard
      dashboard
      Vue
      •2•0•2•0•Updated Jan 4, 2023Jan 4, 2023
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