Repositories list

• GP2-precision-medicine

  Public
  This is the online repository for the manuscript titled "Bridging Genetics and Precision Medicine in Parkinson’s Disease through GP2".

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Mar 26, 2026Mar 26, 2026

• GP2-Project-Templates

  Public
  A repo to host data entry templates for active GP2 projects

  0•1•0•0•Updated Mar 24, 2026Mar 24, 2026

• CNV-Finder

  Public
  Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.

  Python

  •

  Apache License 2.0

  •2•12•0•0•Updated Mar 16, 2026Mar 16, 2026

• Cross_ancestry_PRS_AMR

  Public
  This repository contains all analyses for the manuscript titled "Cross-ancestry performance of Parkinson’s disease polygenic risk scores in admixed Latin Americ…

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Mar 2, 2026Mar 2, 2026

• GP2-AFR-AAC-metaGWAS

  Public
  All materials for "Genome-wide Association Identifies Novel Etiological Insights Associated with Parkinson’s Disease in African and African Admixed Populations"

  Jupyter Notebook

  •

  MIT License

  •1•4•1•0•Updated Mar 1, 2026Mar 1, 2026

• MAPThaplotype

  Public
  This is the online repository for the manuscript titled "Exploring MAPT-containing H1 and H2 haplotypes in Parkinson's Disease across diverse populations"

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Feb 12, 2026Feb 12, 2026

• PDMultiome

  Public
  This is the online repository for the manuscript titled "Massive-scale single-nucleus multi-omics identifies novel rare noncoding drivers of Parkinson’s disease…

  R

  •

  MIT License

  •2•0•0•0•Updated Feb 9, 2026Feb 9, 2026

• long-gwas-pipeline

  Public
  active development hub since 2025

  Python

  •1•2•0•0•Updated Feb 5, 2026Feb 5, 2026

• GenoTools

  Public
  A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps, ancestry estimation. …

  Python

  •

  Apache License 2.0

  •8•15•0•0•Updated Feb 5, 2026Feb 5, 2026

• GP2-Data-Dictionary

  Public
  3•2•0•1•Updated Jan 23, 2026Jan 23, 2026

• SORL1_ADPD

  Public
  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Jan 22, 2026Jan 22, 2026

• Taiwan-GWAS-and-PRS

  Public
  R

  •

  Other

  •0•0•0•0•Updated Jan 13, 2026Jan 13, 2026

• GP2-Male-Female-GWAS

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Dec 29, 2025Dec 29, 2025

• TMEM175_SCARB2_CTSB_PDrisk

  Public
  This is the online repository for the manuscript titled "TMEM175, SCARB2 and CTSB associations with Parkinson's disease risk across populations".

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Dec 29, 2025Dec 29, 2025

• DNAJC13-PD-GeneBurden

  Public
  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Dec 26, 2025Dec 26, 2025

• Multiancestry_LRRK2_p.A419V

  Public
  This is the online repository for the manuscript titled "The LRRK2 p.A419V risk variant influences age of onset for Parkinson's disease in East Asian population…

  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Dec 23, 2025Dec 23, 2025

• SouthAfrican_XWAS

  Public
  This is the online repository for the manuscript titled "Insights into X-Linked Susceptibility to Parkinson’s Disease in the South African Population"

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 22, 2025Dec 22, 2025

• MD-GAP-GP2-CPC

  Public
  This is the online repository for the manuscript titled "Clinical features, genetics, and pathology in a large series of movement disorder cases: a retrospectiv…

  R

  •

  MIT License

  •1•0•0•0•Updated Dec 22, 2025Dec 22, 2025

• GP2-Genome-Browser

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Dec 11, 2025Dec 11, 2025

• .github

  Public
  0•0•0•0•Updated Dec 1, 2025Dec 1, 2025

• releases

  Public
  Code from various GP2 releases in perpetuity.

  WDL

  •1•1•0•0•Updated Dec 1, 2025Dec 1, 2025

• GP2_DCD_WG_templates

  Public
  This is an online repository containing templates for preparing README and notebooks.

  Jupyter Notebook

  •0•0•0•0•Updated Nov 10, 2025Nov 10, 2025

• Genetic_Testing_in_PD

  Public
  This is the online repository for the manuscript titled "How many do we miss? - Evaluation of age at onset and family history as selection criteria for genetic …

  MIT License

  •0•0•0•0•Updated Nov 10, 2025Nov 10, 2025

• PD_genescreen_SouthAfr

  Public
  This is the online repository for the manuscript titled "Comprehensive genetic screening in Parkinson’s disease: NeuroBooster array insights from a South Africa…

  Shell

  •

  MIT License

  •0•0•0•0•Updated Oct 29, 2025Oct 29, 2025

• PAR-ADPD

  Public
  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Oct 24, 2025Oct 24, 2025

• PD-GeneticCharacterization-inAFRandAAC

  Public
  This is the online repository for the manuscript titled "Large-scale genetic characterization of Parkinson’s disease in the African and African admixed populati…

  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Aug 26, 2025Aug 26, 2025

• GP2-WorkingGroups

  Public
  These are repositories and projects directly from GP2 members

  WDL

  •2•2•0•0•Updated Aug 22, 2025Aug 22, 2025

• SouthAfrican_PD_PRS

  Public
  Shell

  •

  MIT License

  •0•0•0•0•Updated Jul 29, 2025Jul 29, 2025

• PGLYRP2_SexDifferences

  Public
  This is the online repository for the manuscript entitled "Sex-stratified analysis of the potential association between PGLYRP2 rs892145 variant and Parkinson’s…

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• LARGE-PD_Phase2

  Public
  This repository contains a detailed description of all analyses performed as part of the LARGE-PD Phase 2 manuscript. The Latin American Research Consortium on …

  2•0•0•0•Updated Jul 11, 2025Jul 11, 2025