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@FEMLab Functional Environmental Microbiology Lab

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    13 repositories

    • Thorn-2025-slurry-flood-disturbance

      Public
      OTU table and other data to accompany Thorn et al 2025 paper entitled "Cattle slurry application impacts soil ecosystem resistance to flooding"
      0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • focus16_manuscript

      Public
      Repo for data generating scripts, paper rmarkdown and other files involved in methods
      Python
      •0•0•0•0•Updated May 2, 2022May 2, 2022

    • Dry-Lab-Procotols

      Public
      Pipelines, methods etc for data analysis.
      R
      •0•0•0•0•Updated Jan 15, 2020Jan 15, 2020

    • focus16

      Public
      16S draft genome reassembly for the construction of high-resolution 16S rDNA databases.
      Python
      •
      MIT License
      •0•0•1•0•Updated Dec 13, 2019Dec 13, 2019

    • FEMLab.github.io

      Public
      Lab website
      HTML
      •0•0•0•0•Updated Nov 23, 2019Nov 23, 2019

    • SN_minitrials

      Public
      HTML
      •0•0•0•0•Updated Sep 25, 2019Sep 25, 2019

    • DNA-RNA-Protein-Coextraction-Method-Soil

      Public
      Data associated with publication of method detailing DNA, RNA and protein co-extraction method from soil and other complex environmental samples.
      HTML
      •0•0•0•0•Updated Nov 28, 2018Nov 28, 2018

    • Simple-stats-in-R-or-otherwise

      Public
      The usual suspects - T-tests; ANOVA; adjust P values etc
      1•0•0•0•Updated Jul 13, 2018Jul 13, 2018

    • Wet-Lab-Protocols

      Public
      Wet lab SOPs for FEM lab members
      1•0•0•0•Updated May 10, 2018May 10, 2018

    • R-basics

      Public
      Installing, updating; df manipulation; Ggplot aesthetics etc
      R
      •1•0•0•0•Updated Oct 4, 2017Oct 4, 2017

    • MetaProteomeAnalyzer-bits

      Public
      SOP for MPA and other useful bit and pieces
      0•0•0•0•Updated Mar 8, 2017Mar 8, 2017

    • NUIG-machine-SOPs

      Public
      SOPS for some of the NUIG Microbiology machines
      0•0•0•0•Updated Mar 7, 2017Mar 7, 2017

    • Simple-plots-in-R

      Public
      Scripts for making simple bar plots, box & whisker, etc etc
      1•0•0•0•Updated Feb 2, 2017Feb 2, 2017
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