Repositories list

• COBRAxy

  Public
  Python

  •

  MIT License

  •11 fork•55 stars•11 issue•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• noncanonical-tca-cancer-analysis

  Public
  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 6, 2026Feb 6, 2026

• spFBA

  Public
  Jupyter Notebook

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jan 23, 2026Jan 23, 2026

• FeS_RedPred

  Public
  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 21, 2025Jul 21, 2025

• CCLE-metabolic-features

  Public
  features extracted from CCLE database via constraint-based modelling

  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 20, 2025Jun 20, 2025

• DeadCell_analysis

  Public
  Scripts and data used for the paper "Identifying Damage-Related Features in scRNA-seq Data"

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 2, 2024Oct 2, 2024

• scFBApy

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 5, 2023Nov 5, 2023

• FalseDiscoveriesAnalysis

  Public
  Adjusting for false discoveries in constraint- and sampling-based differential metabolic flux analysis

  biomedical-informaticscobrapybiotechnology+ 4

  biomedical-informaticscobrapybiotechnologymetabolic-modelsmetabolic-networkflux-balance-analysisflux-analysis

  Jupyter Notebook

  •00 forks•33 stars•00 issues•00 pull requests•Updated Nov 3, 2023Nov 3, 2023

• RASpy

  Public
  RASpy: a Scanpy Extension for Metabolic ReactionActivity Analysis

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 15, 2023Sep 15, 2023

• DenoisingFBA

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 21, 2023Mar 21, 2023

• Prediction_Flavoprotein_EM

  Public
  This repository contains the data and script used for the manuscript "Machine learning for efficient prediction of protein redox potential: the flavoproteins ca…

  Jupyter Notebook

  •33 forks•22 stars•11 issue•00 pull requests•Updated Mar 15, 2023Mar 15, 2023

• efficientFVA

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 30, 2022Oct 30, 2022