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@BioMeDS BioMedical Data Science

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    21 repositories

    • CTFd

      Public
      CTFs as you need them
      Python
      •
      Apache License 2.0
      •2.7k•0•0•0•Updated Apr 30, 2026Apr 30, 2026

    • stats-demos

      Public
      Shinylive statistic demos
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Apr 30, 2026Apr 30, 2026

    • Fabry_Cardiac_Measures

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 20, 2026Apr 20, 2026

    • Python_for_Bio

      Public
      Programming with Python course for master biosciences at the University of Würzburg (winter semester 24/25)
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Mar 19, 2026Mar 19, 2026

    • dcm2bids_convert

      Public
      Python tool to run DICOM to BIDS conversion - optionally using the official dcm2bids
      Python
      •
      MIT License
      •0•1•0•0•Updated Feb 17, 2026Feb 17, 2026

    • ukbb_cardiac

      Public
      Some code for UK Biobank cardiac MR image analysis
      Python
      •
      Apache License 2.0
      •2•0•0•0•Updated Feb 6, 2026Feb 6, 2026

    • cmr-dynamic-radiomics-stability

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jan 27, 2026Jan 27, 2026

    • Fabry_WML_Quantification

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jan 23, 2026Jan 23, 2026

    • torchio

      Public
      Medical imaging toolkit for deep learning
      Python
      •
      Apache License 2.0
      •262•0•0•0•Updated Jan 20, 2026Jan 20, 2026

    • onboarding-base-module

      Public
      MIT License
      •0•2•7•0•Updated Nov 17, 2025Nov 17, 2025

    • f18-psma-pet-ct-ai

      Public
      Detection of local prostate cancer recurrence from PET/CT scans using deep learning
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Oct 8, 2025Oct 8, 2025

    • Papaya_UKB

      Public
      JavaScript
      •
      MIT License
      •0•1•0•0•Updated Sep 29, 2025Sep 29, 2025

    • DTI_Processing_Snakemake

      Public
      Python
      •0•2•0•0•Updated Aug 14, 2025Aug 14, 2025

    • starfish

      Public
      starfish: unified pipelines for image-based transcriptomics
      Python
      •
      MIT License
      •70•1•0•0•Updated Jul 4, 2025Jul 4, 2025

    • mudRapp-seq

      Public
      In-situ sequencing with multiple direct RNA-assisted padlock probing (mudRapp-seq)
      Jupyter Notebook
      •
      MIT License
      •1•2•0•0•Updated Jun 10, 2025Jun 10, 2025

    • minimal-git-example

      Public
      A minimal example to show how git works
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 4, 2025Mar 4, 2025

    • shiny-gggenomes

      Public
      shiny/shinylive demo for gggenomes
      visualizationalignmentggplot
      visualizationalignmentggplotshiny-r
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • Python_Course_WS23

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 12, 2024Jul 12, 2024

    • metabarcoding_pipeline

      Public
      R
      •
      MIT License
      •1•0•0•0•Updated Mar 14, 2024Mar 14, 2024

    • onboarding

      Public
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Jul 6, 2023Jul 6, 2023

    • GWAS

      Public
      R
      •
      MIT License
      •9•0•0•0•Updated Apr 11, 2022Apr 11, 2022
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