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    50 repositories

    • HOSS

      Public
      Hierarchical Optimization of Systems Simulations: A suite of tools working with the FindSim project for model optimization
      Python
      •1•1•1•0•Updated Nov 29, 2025Nov 29, 2025

    • FindSim

      Public
      FindSim - A Framework for Integrating Neuronal Data and Signaling Models
      moosesignallingmodel-estimation
      moosesignallingmodel-estimationbiochemical-networks
      GAP
      •8•8•8•2•Updated Nov 22, 2025Nov 22, 2025

    • HillTau

      Public
      Sparse, efficient, non-ODE approximation for biochemical signaling
      Python
      •
      GNU General Public License v3.0
      •3•1•1•1•Updated Aug 30, 2025Aug 30, 2025

    • Cell_Synapse_Variability

      Public
      Code and data for paper on cell/synapse heterogeneity and variability, Sulu Mohan and U.S. Bhalla
      GAP
      •0•0•0•0•Updated Jun 8, 2025Jun 8, 2025

    • DBLO_paper

      Public
      AGS Script
      •1•0•0•0•Updated May 7, 2025May 7, 2025

    • STP_EI_paper_figs

      Public
      Python
      •0•0•0•0•Updated Mar 24, 2025Mar 24, 2025

    • moose-core

      Public
      C++ basecode and python scripting interface
      pythonneuronspython-interface
      pythonneuronspython-interfaceneural-simulatormoosemoose-simulatorconductance-based-neuron
      C++
      •
      GNU General Public License v3.0
      •36•19•47•3•Updated Mar 20, 2025Mar 20, 2025

    • synaptic-convergence-paper

      Public
      Convergence of grouped and sequential inputs from neural ensembles in a randomly connected feedforward network
      C
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

    • moose-examples

      Public
      Example scripts, demo and tutorials
      demoexamplesneuroscience
      demoexamplesneurosciencemoose
      Python
      •
      GNU General Public License v2.0
      •17•6•2•5•Updated Nov 28, 2024Nov 28, 2024

    • behaveArd

      Public
      Arduino and Python interface code for mouse behaviour.
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 10, 2024Nov 10, 2024

    • hossFigs

      Public
      Figures for paper on Hierarchical optimization
      GAP
      •0•0•0•0•Updated Nov 2, 2024Nov 2, 2024

    • Asymmetries-Analysis-Scripts

      Public
      Short scripts to analyse and plot grid stimulation data for asymmetries project
      Jupyter Notebook
      •1•0•1•0•Updated Oct 28, 2024Oct 28, 2024

    • almirah

      Public
      a dataset management tool
      pythondatasetdataset-management
      pythondatasetdataset-management
      Python
      •
      MIT License
      •2•1•1•1•Updated Jun 26, 2024Jun 26, 2024

    • MouseBehaviour

      Public
      Arduino and PointGrey camera based behaviour setup.
      arduinopython3animal-behavior
      arduinopython3animal-behaviorpointgrey
      C++
      •
      GNU General Public License v3.0
      •5•2•7•3•Updated Oct 3, 2023Oct 3, 2023

    • TimeCellAnalysis

      Public
      MATLAB
      •3•0•0•1•Updated Jan 28, 2023Jan 28, 2023

    • TimeCellAnalysis-1

      Public
      MATLAB
      •3•0•0•0•Updated Jan 28, 2023Jan 28, 2023

    • CAMP2022-moose-gui

      Public
      Python
      •1•0•0•0•Updated Aug 4, 2022Aug 4, 2022

    • CNS-2022-satellite-tutorial-MOOSE

      Public
      Moose tutorial for CNS 2022
      Python
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Jun 22, 2022Jun 22, 2022

    • deploy

      Public
      Deploy BhallaLab applications to PyPI and docker.
      Shell
      •
      GNU General Public License v3.0
      •2•0•0•2•Updated Jun 20, 2022Jun 20, 2022

    • rho-matlab

      Public
      MATLAB
      •
      MIT License
      •2•0•0•0•Updated Jan 31, 2022Jan 31, 2022

    • moose

      Public
      MOOSE simulator.
      neuroscienceneural-simulatormoose
      neuroscienceneural-simulatormoosemoose-simulator
      C++
      •
      GNU General Public License v3.0
      •20•27•10•3•Updated Jan 28, 2022Jan 28, 2022

    • 2p_analysis

      Public
      Analysis scripts for 2-P Ca imaging datasets along with behaviour.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 2, 2021Nov 2, 2021

    • dynamic_clamp

      Public
      A fast, microcontroller-based dynamic clamp system
      C++
      •
      Other
      •6•0•0•0•Updated Jul 18, 2021Jul 18, 2021

    • homebrew-moose

      Public
      Homebrew formulae for MOOSE and related projects
      Ruby
      •
      GNU General Public License v3.0
      •2•0•1•1•Updated Mar 13, 2020Mar 13, 2020

    • FindSimLayout

      Public
      layout display for Model
      JavaScript
      •
      GNU General Public License v3.0
      •1•0•1•0•Updated Sep 13, 2019Sep 13, 2019

    • GSoC

      Public
      Google Summer of Code (GSOC) Projects
      gsocgsoc-2016gsoc-2017
      gsocgsoc-2016gsoc-2017gsoc-2018
      HTML
      •
      MIT License
      •2•0•0•0•Updated Aug 22, 2019Aug 22, 2019

    • Scripts

      Public
      Some scripts for varisous lab projects
      bhallalab
      bhallalab
      GAP
      •5•5•0•0•Updated Aug 6, 2019Aug 6, 2019

    • moose-gui

      Public
      PyQt frontend (chemical signaling and neuronal simulations) for MOOSE
      Python
      •5•1•16•5•Updated Jun 28, 2019Jun 28, 2019

    • moogli

      Public
      Extension of https://github.com/aviralg/moogli
      C++
      •
      GNU General Public License v2.0
      •0•0•0•1•Updated Jun 4, 2019Jun 4, 2019

    • moose-binder

      Public
      Some MOOSE examples on binder.
      neurosciencencbsmoose
      neurosciencencbsmoosebinder-readybinder-jupyter-notebookbhallalab
      Jupyter Notebook
      •1•0•0•0•Updated Jun 3, 2019Jun 3, 2019
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