TASK-5387 - Add Polygenic Scores (PGS)#697

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jtarraga wants to merge 187 commits intodevelopfrom

Commits on Dec 18, 2023

lib: download polygenic scores (PGS), #TASK-5406, #TASK-5387
jtarraga
committed

Commits on Dec 19, 2023

lib: update the build command to support PGS data, #TASK-5407, #TASK-5387
jtarraga
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lib: copy PGS version file from download to generated json directory, #TASK-5407, #TASK-5387
jtarraga
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lib: update the load command to support PGS data, #TASK-5410, #TASK-5387
jtarraga
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Commits on Dec 22, 2023

Commits on Jan 2, 2024

lib: add support for annotating using PGS, #TASK-5411, #TASK-5387
jtarraga
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Commits on Jan 3, 2024

Commits on Jan 21, 2024

download: gwas catalog fixes
imedina
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Commits on Jan 29, 2024

lib: take into account the NumberFormatException, #TASK-5407, #TASK-5387
jtarraga
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Commits on Feb 2, 2024

Commits on Feb 7, 2024

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Commits on Mar 7, 2024

Commits on Mar 8, 2024

Commits on Mar 22, 2024

lib: improve conservation downloader by updating versions from config file, adding log messages, removing hardcode filenames, sonnar issues,..., #TASK-5775, #TASK-5564
jtarraga
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Commits on Mar 28, 2024

lib: update regulation download manager, and the configuration file, to take into account the version for miRBase and miRTarBase, #TASK-5775, #TASK-5564
jtarraga
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Commits on Apr 3, 2024

Commits on Apr 4, 2024

lib: fix Gwas Catalog builder for clinical variants, #TASK-5776, #TASK-5564
jtarraga
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Commits on Apr 5, 2024

lib: refactor code by changing the DownloadProperties.URLProperties, #TASK-5775, #TASK-5564
jtarraga
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Commits on Apr 12, 2024

lib: update CellBase downloaders, #TASK-5775, #TASK-5564
jtarraga
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Commits on Apr 15, 2024

core: update CellBase configuration file, #TASK-5775, #TASK-5564
jtarraga
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Commits on Apr 19, 2024

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Commits on May 15, 2024

Commits on May 16, 2024

lib: improve gene downloader by taking into account the manually downloaded files and creating the data source version files, #TASK-5575, #TASK-5564
jtarraga
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Commits on May 17, 2024

Commits on May 18, 2024

lib: refactor PGS builder to solve the RocksDB issue, #TASK-5407, #TASK-5387
jtarraga
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Commits on May 20, 2024

lib: improve PGS builder by speeding-up RocksDB, #TASK-5407, #TASK-5387
jtarraga
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Commits on May 27, 2024

Commits on Jun 22, 2024

Merge branch 'develop' into TASK-5564
imedina
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Commits on Jun 23, 2024

lib: add hpo filter to GeneQuery
imedina
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Commits on Jul 3, 2024

Commits on Jul 5, 2024

Commits on Jul 8, 2024

Commits on Jul 9, 2024

lib: add variation to the EtlCommons dataVersionFilenamesMap, #TASK-5575, #TASK-5564
jtarraga
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Commits on Jul 22, 2024

Merge branch 'develop' into TASK-5564
jtarraga
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Commits on Jul 24, 2024

Commits on Jul 25, 2024

Commits on Jul 26, 2024

Commits on Jul 29, 2024

Commits on Jul 31, 2024

Commits on Aug 1, 2024

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Commits on Aug 6, 2024

Commits on Aug 9, 2024

lib: fix the function to save status and message of the downloaded files; improve summary log and update downloader managers according to these changes, #TASK-5575, #TASK-5564
jtarraga
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Commits on Aug 10, 2024

Commits on Aug 13, 2024

Merge branch 'TASK-5564' into TASK-5387
jtarraga
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Commits on Sep 12, 2024

lib: limit WriteBatch for number of items, #TASK-5407, #TASK-5387
jtarraga
committed

Commits on Oct 1, 2024