Applications created for Sun Lab

Tech: R, Python, Perl, SLURM scripts

Perl applications used to compare Haplotype Assembly algorithms

Name		Name	Last commit message	Last commit date
Latest commit History 67 Commits
legacy		legacy
.gitattributes		.gitattributes
3sample.bcftools.batch		3sample.bcftools.batch
3sample.dbm.batch		3sample.dbm.batch
3sample.hapseq2.batch		3sample.hapseq2.batch
3sample.whatshap.batch		3sample.whatshap.batch
5sample.bcftools.batch		5sample.bcftools.batch
5sample.dbm.batch		5sample.dbm.batch
5sample.hapseq2.batch		5sample.hapseq2.batch
5sample.whatshap.batch		5sample.whatshap.batch
README.md		README.md
getGenotype.pl		getGenotype.pl
getHaplotype.pl		getHaplotype.pl
getHaplotypeAgreement.r		getHaplotypeAgreement.r
getHaplotypeAgreement.sh		getHaplotypeAgreement.sh
getSharedPositions.sh		getSharedPositions.sh
getSwitchDistance.pl		getSwitchDistance.pl
mkdir.sh		mkdir.sh

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