[CLEANUP] Update links for new org

CITATION.cff

@@ -8,4 +8,4 @@ authors:
 title: oceanarray
 version: 0.0.1
 date-released: 2025-06-07
-url: https://github.com/eleanorfrajka/oceanarray
+url: https://github.com/ocean-uhh/oceanarray

README.md

@@ -18,7 +18,7 @@ OceanArray processes raw oceanographic instrument data following CF conventions.
 ### Installation
 
 ```bash
-git clone https://github.com/eleanorfrajka/oceanarray.git
+git clone https://github.com/ocean-uhh/oceanarray.git
 cd oceanarray
 pip install -r requirements-dev.txt
 pip install -e .
@@ -48,7 +48,7 @@ stage2.process_mooring('mooring_name')
 - Preserve all original data with standardized variable names and metadata
 - No quality control applied - pure format conversion
 
-**Stage 2: Temporal Corrections** (`stage2.py`)  
+**Stage 2: Temporal Corrections** (`stage2.py`)
 - Apply clock offset corrections between instruments
 - Trim data to deployment period (start_time to end_time)
 - Add deployment metadata and processing provenance
@@ -160,7 +160,7 @@ make html
 
 The documentation includes:
 - **Processing Methods**: Methodology for each stage
-- **API Reference**: Function and class documentation  
+- **API Reference**: Function and class documentation
 - **Demo Notebooks**: Tutorials and examples
 - **Development Guide**: Roadmap and contribution guidelines
 
@@ -170,7 +170,7 @@ The documentation includes:
 
 ### Current Support
 - **Sea-Bird SBE**: CNV and ASCII formats (`.cnv`, `.asc`)
-- **RBR**: RSK and ASCII formats (`.rsk`, `.dat`)  
+- **RBR**: RSK and ASCII formats (`.rsk`, `.dat`)
 - **Nortek**: ASCII format with header files (`.aqd`)
 
 ### Planned Support
@@ -189,7 +189,7 @@ pytest
 # With coverage
 pytest --cov=oceanarray
 
-# Specific test categories  
+# Specific test categories
 pytest tests/test_stage1.py tests/test_stage2.py
 ```
 
@@ -256,7 +256,7 @@ If you use OceanArray in your research, please cite:
 @software{oceanarray,
   title = {{OceanArray}: A Python framework for oceanographic mooring array processing},
   author = {Frajka-Williams, Eleanor},
-  url = {https://github.com/eleanorfrajka/oceanarray},
+  url = {https://github.com/ocean-uhh/oceanarray},
   year = {2025}
 }
-```
+```

docs/source/index.rst

@@ -57,7 +57,7 @@ Contents
    :maxdepth: 2
    :caption: Help and reference
 
-   GitHub Repo <http://github.com/eleanorfrajka/oceanarray>
+   GitHub Repo <https://github.com/ocean-uhh/oceanarray>
    roadmap
    oceanarray
    faq

oceanarray/config/legacy/project_RAPID.yaml

@@ -19,7 +19,7 @@ creator_url: "https://www.noc.ac.uk"
 creator_institution: "National Oceanography Centre"
 creator_id: https://edmo.seadatanet.org/report/17
 array: RAPID
-comment: Data file in OS format produced using http://github.com/eleanorfrajka/oceanarray
+comment: Data file in OS format produced using https://github.com/ocean-uhh/oceanarray
 sea_area: North Atlantic Ocean
 sea_area_vocabulary: https://vocab.nerc.ac.uk/collection/C19/current/
 #geospatial_lat_min:

pyproject.toml

@@ -26,9 +26,9 @@ dynamic = [
   "dependencies",
   "version",
 ]
-urls.documentation = "https://github.com/eleanorfrajka/oceanarray"
-urls.homepage = "https://github.com/eleanorfrajka/oceanarray"
-urls.repository = "https://github.com/eleanorfrajka/oceanarray"
+urls.documentation = "https://github.com/ocean-uhh/oceanarray"
+urls.homepage = "https://github.com/ocean-uhh/oceanarray"
+urls.repository = "https://github.com/ocean-uhh/oceanarray"
 
 
 [tool.setuptools.packages.find]

tests/legacy/test_process_rodb.py

@@ -67,6 +67,7 @@ def test_apply_microcat_with_flags(tmp_path):
 
     # Patch rodbload to return this dataset
     import oceanarray.legacy.process_rodb as process_rodb
+
     process_rodb.rodb.rodbload = lambda _: ds
 
     ds_cal = apply_microcat_calibration_from_txt(txt, use_path)
@@ -85,7 +86,7 @@ def test_apply_microcat_calibration_from_txt(tmp_path):
     data_dir = Path(__file__).parent.parent / "data"
     txt_file = data_dir / "wb1_12_2015_005.microcat.txt"
     use_file = data_dir / "wb1_12_2015_6123.use"
-    
+
     if not txt_file.exists() or not use_file.exists():
         pytest.skip("Legacy test data files not available")
 
@@ -103,7 +104,7 @@ def test_apply_microcat_calibration_from_txt(tmp_path):
 def test_stage2_trim_from_raw(tmp_path):
     data_dir = Path(__file__).parent.parent / "data"
     raw_file = data_dir / "wb1_12_2015_6123.raw"
-    
+
     if not raw_file.exists():
         pytest.skip("Legacy test data files not available")
 

tests/legacy/test_rodb.py

@@ -38,10 +38,10 @@ def test_rodbload_missing_time(tmp_path, caplog):
 
 def test_rodbload_raw_file():
     file_path = Path(__file__).parent.parent / "data" / "wb1_12_2015_6123.raw"
-    
+
     if not file_path.exists():
         pytest.skip("Legacy test data files not available")
-    
+
     variables = ["YY", "MM", "DD", "HH", "T", "C", "P"]
     ds = rodbload(file_path, variables)
 
@@ -83,7 +83,7 @@ def test_format_latlon():
 
 def test_rodb_read_write_roundtrip():
     infile = Path(__file__).parent.parent / "data" / "wb1_12_2015_6123_head10.use"
-    
+
     if not infile.exists():
         pytest.skip("Legacy test data files not available")