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Pull requests: obophenotype/upheno

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Pull requests list

Deprecate UPHENO:0001002, rename UPHENO:0001001 (#1009)
#1026 opened Apr 7, 2026 by matentzn Collaborator Loading…
1
8
Fix broken S3 links in pattern overview script (#1008)
#1025 opened Apr 7, 2026 by matentzn Collaborator Loading…
Remove part_of ∘ develops_from → part_of chain (#979)
#1024 opened Apr 7, 2026 by matentzn Collaborator Loading…
Restrict chemical entity patterns to anatomical entities (#981)
#1023 opened Apr 7, 2026 by matentzn Collaborator Loading…
Add cell nucleus label overrides for GO:0005634 terms (#972)
#1022 opened Apr 7, 2026 by matentzn Collaborator Loading…
Add QC checks for obsolete labels and phenotype root (#1011)
#1021 opened Apr 7, 2026 by matentzn Collaborator Loading…
Integrate MGI MP-HP lexical mappings into build (#1013)
#1020 opened Apr 7, 2026 by matentzn Collaborator Loading…
DRAFT working on #1002
#1003 opened Oct 1, 2025 by sbello Contributor Loading…
23
Add OBA integration and SSSOM mapping steps
#1001 opened Aug 16, 2025 by matentzn Collaborator • Draft
Update the EQ in abnormalLevelOfChemicalEntity
#982 opened Apr 14, 2025 by rays22 Contributor Loading…
1
@rays22
4
New patterns for number of GOCC in location.
#976 opened Feb 12, 2025 by seger Member Loading…
@rays22
3
New GOBP and GOMF-based patterns
#974 opened Jan 17, 2025 by seger Member Loading…
Increased/decreased chemical concentration in location
#973 opened Jan 17, 2025 by seger Member Loading…
8
Add draft docs for MP HP mappings
#963 opened Oct 31, 2024 by matentzn Collaborator Loading…
5
Upheno mappings and utilities (WIP)
#933 opened Mar 13, 2024 by matentzn Collaborator • Draft
Create attributeNormal.yaml
#908 opened Mar 2, 2023 by Daniel-Olson Loading…
Create attributeSeverity.yaml
#907 opened Mar 2, 2023 by Daniel-Olson Loading…
Add new partial pattern to help queries
#905 opened Mar 2, 2023 by rays22 Contributor Loading…
1
@rays22
4
Add SOP docs for all uPheno social workflows
#901 opened Jan 27, 2023 by matentzn Collaborator Loading…
@rays22
2
Add 'abnormally scaly anatomical entity' pattern template
#896 opened Oct 27, 2022 by rays22 Contributor • Draft
1
@rays22
3
Add abnormally dilated cellular component template
#892 opened Oct 13, 2022 by rays22 Contributor • Draft
1
@rays22
5
Absence #719
#757 opened Aug 4, 2021 by dosumis Contributor • Draft
DO NOT MERGE: Create abnormalContractilityOfAnatomicalEntity.yaml
#609 opened Feb 25, 2020 by nicolevasilevsky Member Loading…
7
DO NOT MERGE: Symptom
#508 opened Aug 5, 2019 by matentzn Collaborator Loading…
DO NOT MERGE: New pattern abnDecEfficOfBiolProc June 28 2019 reconciliation
#483 opened Jun 28, 2019 by chris-grove Contributor Loading…
14
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