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Add HRA kidney NTR template (2 new terms) #3717

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Add HRA kidney NTR template (2 new terms) #3717

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3 changes: 3 additions & 0 deletions bulk_ntr_workflow/source_data/kidney.csv
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tables,as,as_label,UBERON ID,Pull Request/Issue,parents_as,parents_as_label,references
kidney,https://purl.org/ccf/ASCTB-TEMP_kidney-lymphatic-vessel,kidney lymphatic vessel,,,UBERON:0006544,kidney vasculature,
kidney,https://purl.org/ccf/ASCTB-TEMP_papillary-tip-epithelium,Papillary Tip Epithelium,,,UBERON:0009095,tip of renal papilla,
2 changes: 2 additions & 0 deletions src/templates/hra-kidney-groups.template.tsv
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ID LABEL Definition def_xref genus location In_subset Date Contributor Present_in_taxon Wikipedia_image xref
ID LABEL A IAO:0000115 >A oboInOwl:hasDbXref SPLIT=| EC % EC BFO:0000050 some % AI oboInOwl:inSubset AT dcterms:date^^xsd:dateTime AI dcterms:contributor AI RO:0002175 A foaf:depiction A oboInOwl:hasDbXref SPLIT=|
1 change: 1 addition & 0 deletions src/templates/hra-kidney-reports/candidates.tsv
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label as_iri uberon_id note
1 change: 1 addition & 0 deletions src/templates/hra-kidney-reports/errors.tsv
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label as_iri issue_type parent_id parent_label detail
3 changes: 3 additions & 0 deletions src/templates/hra-kidney-reports/input.tsv
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table as_iri label uberon_id parent_id parent_label references term_type
https://purl.org/ccf/ASCTB-TEMP_kidney-lymphatic-vessel kidney lymphatic vessel UBERON:0006544 kidney vasculature leaf
https://purl.org/ccf/ASCTB-TEMP_papillary-tip-epithelium Papillary Tip Epithelium UBERON:0009095 tip of renal papilla leaf
2 changes: 2 additions & 0 deletions src/templates/hra-kidney-reports/name_corrections.tsv
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source_label corrected_label reason
Papillary Tip Epithelium epithelium of tip of renal papilla UBERON convention uses 'epithelium of X' pattern rather than 'X Epithelium'. The corrected name follows the standard anatomical naming pattern seen in similar UBERON terms like 'epithelium of lung', 'epithelium of colon'. Keep source name as synonym.
4 changes: 4 additions & 0 deletions src/templates/hra-kidney.template.tsv
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ID LABEL Definition def_xref is_a part_of develops_from In_subset Date Contributor Present_in_taxon Wikipedia_image xref
ID LABEL A IAO:0000115 >A oboInOwl:hasDbXref SPLIT=| SC % SC BFO:0000050 some % SC RO:0002202 some % AI oboInOwl:inSubset AT dcterms:date^^xsd:dateTime AI dcterms:contributor AI RO:0002175 A foaf:depiction A oboInOwl:hasDbXref SPLIT=|
http://purl.obolibrary.org/obo/UBERON_8930105 kidney lymphatic vessel A lymphatic vessel that is part of a kidney. https://purl.org/ccf/ASCTB-TEMP_kidney-lymphatic-vessel|PMID:24065628 UBERON:0001473 UBERON:0002113 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606
http://purl.obolibrary.org/obo/UBERON_8930106 epithelium of tip of renal papilla An epithelium that lines the tip of the renal papilla where it projects into the minor calyx. This epithelial layer consists of transitional epithelium (urothelium) that marks the transition from the simple epithelium of the collecting ducts to the urothelium that lines the urinary collecting system, including the calyces, renal pelvis, and ureters. https://purl.org/ccf/ASCTB-TEMP_papillary-tip-epithelium UBERON:0000483 UBERON:0009095 http://purl.obolibrary.org/obo/uberon/core#added_by_HRA 2026-05-26T00:00:00Z https://orcid.org/0000-0002-2999-0103 http://purl.obolibrary.org/obo/NCBITaxon_9606 Wikipedia:Renal_papilla
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