Add skeletal terms for early ray-finned fishes (Actinopterygii)

[cmungall]

Summary

• Added three new terms for skeletal elements found in early ray-finned fishes:
  • antopercle (UBERON:7770001)
  • dermohyal (UBERON:7770002)
  • lateral gular (UBERON:7770003)

Details

• All terms are classified as a type of dermal bone
• Appropriate part_of relationships were added to each term
• References to scientific publications were included in the definitions
• Added contributor attribution via ORCID

Closes #3431

🤖 Generated with Claude Code

[dosumis]

@cmungall - IDs will clash.

[dosumis]

Also would strongly prefer taxon constraints to be present.

[github-actions]

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR creator will be allowed to proceed with merging without explicit approval, should they wish to do so.

[KrishnaTO]

@cmungall @matentzn Need some changes:

1. Assign new IDs, if PR #3536 using these IDs is not closed
2. Update definitions with source annotations
3. Add relationship relationship: in_taxon NCBITaxon:7898 ! Actinopterygii to each

id: UBERON:7770012 (Proposed)
name: antopercle 
def: "Paired dermal element anterior to the opercle and posterior to the dermohyal." [Nielsen, E. (1942). Studies on Triassic fishes from East Greenland 1. Glaucolepis and Boreosomus. Palaeozoologica Groenlandica 1, 1–403]
relationship: in_taxon NCBITaxon:7898 ! Actinopterygii

id: UBERON:7770013 (Proposed)
name: dermohyal
def: "Paired element that is typically fused to the hyomandibula. This element is often referred to as the antoperculum/antopercular but is distinct in being fused to the hyomandibula." [Giles, S., Coates, M. I., Garwood, R. J., Brazeau, M. D., Atwood, R., Johanson, Z., & Friedman, M. (2015). Endoskeletal structure in Cheirolepis (Osteichthyes, Actinopterygii), An early ray‐finned fish. Palaeontology, 58(5), 849–870]
relationship: in_taxon NCBITaxon:7898 ! Actinopterygii

id: UBERON:7770014 (Proposed)
name: lateral gular
def: "Paired dermal elements on the ventral surface of the skull bearing the gular pit line." [Stack, J., & Gottfried, M. D. (2022). A new, exceptionally well-preserved Permian actinopterygian fish from the Minnekahta Limestone of South Dakota, USA. Journal of Systematic Palaeontology, 19(18), 1271–1302]
relationship: in_taxon NCBITaxon:7898 ! Actinopterygii

Should be able to merge after.

[Copilot]

Pull request overview

This PR adds three new anatomical terms to the UBERON ontology for skeletal elements found in early ray-finned fishes (Actinopterygii): antopercle, dermohyal, and lateral gular. Each term includes scientific definitions with references to specific specimens, appropriate taxonomic relationships, and contributor attribution.

Changes:

• Added antopercle (UBERON:7770001) as a paired dermal element in the opercular region
• Added dermohyal (UBERON:7770002) as a paired element fused to the hyomandibula, with synonyms for antopercular/antoperculum
• Added lateral gular (UBERON:7770003) as paired dermal elements on the ventral skull surface

[Copilot]

The created_by: dragon-ai-agent line has been removed from the UBERON:7770009 term (kidney interpolar region). This appears to be an unintended change that is unrelated to the addition of the skeletal terms for early ray-finned fishes. This line should be retained.