adding present-in-taxon for hermaphrodite gonad, see https://github.com/geneontology/helpdesk/discussions/399

[cmungall]

No description provided.

[github-actions]

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR editor will be allowed to proceed with merging without explicit approval, should they wish to do so.

[github-actions]

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR creator will be allowed to proceed with merging without explicit approval, should they wish to do so.

[anitacaron]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2024-01-02/uberon-simple.owl
• Loaded from: file:/work/src/ontology/../../master/src/ontology/uberon-simple.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2024-01-02/uberon-simple.owl
• Loaded from: file:/work/src/ontology/uberon-simple.owl

Ontology imports

Ontology annotations

hermaphrodite gonad http://purl.obolibrary.org/obo/UBERON_0002537

Added

• hermaphrodite gonad present_in_taxon NCBITaxon_6535

  • source "PMID:15270240"

• hermaphrodite gonad comment "Definition/use of GO:0040035 hermaphrodite genitalia development geneontology/helpdesk#399"

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
• Version IRI: None
• Loaded from: file:/work/src/ontology/../../master/src/ontology/uberon-edit.obo

Right

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
• Version IRI: None
• Loaded from: file:/work/src/ontology/uberon-edit.obo

Ontology imports

Ontology annotations

hermaphrodite gonad http://purl.obolibrary.org/obo/UBERON_0002537

Added

• hermaphrodite gonad present in taxon NCBITaxon_6535

  • source "PMID:15270240"^^string

• hermaphrodite gonad comment "https://github.com/geneontology/helpdesk/discussions/399"^^[string](http://www.w3.org/2001/XMLSchema#string)

[github-actions]

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR creator will be allowed to proceed with merging without explicit approval, should they wish to do so.

[KrishnaTO]

@anitacaron can this be reviewed/merged?

[Copilot]

Pull request overview

This pull request adds taxonomic annotation to the hermaphrodite gonad term (UBERON:0002537) by specifying that this structure is present in Cornu aspersum (garden snail), with supporting evidence from a published paper.

Changes:

• Added a comment linking to the GitHub discussion that motivated this change
• Added a present_in_taxon relationship asserting that hermaphrodite gonads are present in Cornu aspersum, with PMID citation as source

[KrishnaTO]

@anitacaron could you approve the review if no issues found? Thank you!