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deadbio now = selbio #720

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Merged
Rick-Methot-NOAA merged 1 commit into from
Sep 5, 2025
Merged

deadbio now = selbio #720

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7 changes: 3 additions & 4 deletions SS_selex.tpl
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Original file line number Diff line number Diff line change
Expand Up @@ -1962,7 +1962,7 @@ FUNCTION void Make_FishSelex()
{
j = -j; // fleet number being mirrored for retention
k = seltype(j + Nfleet, 2); // discard approach for fleet j
// note that retain_a and discmort2_a have already been mirrored earlier in this fxn
// note that retain_a and discmort2_a have already been calculated earlier in this fxn
}
switch (k) // age-retention function
{
Expand All @@ -1978,8 +1978,8 @@ FUNCTION void Make_FishSelex()
{
sel_ret_bio(s, f, g) = elem_prod(sel_bio(s, f, g), retain_a(y, f, gg)); // retained wt-at-age
sel_ret_num(s, f, g) = elem_prod(sel_num(s, f, g), retain_a(y, f, gg)); // retained numbers
sel_dead_bio(s, f, g) = sel_ret_bio(s, f, g); // dead wt
sel_dead_num(s, f, g) = sel_ret_num(s, f, g); // dead numbers
sel_dead_bio(s, f, g) = elem_prod(Wt_Age_t(tz, f, g), discmort2_a(y, f, gg)); // dead wt
sel_dead_num(s, f, g) = discmort2_a(y, f, gg); // dead numbers
break;
}
case 2: // age-based retention and discard mortality, same body wt as retained fish
Expand All @@ -1989,7 +1989,6 @@ FUNCTION void Make_FishSelex()
sel_ret_num(s, f, g) = elem_prod(sel_num(s, f, g), retain_a(y, f, gg)); // retained numbers
sel_dead_bio(s, f, g) = elem_prod(Wt_Age_t(tz, f, g), discmort2_a(y, f, gg)); // dead wt
sel_dead_num(s, f, g) = discmort2_a(y, f, gg); // dead numbers
// if (y == styr) warning << f << " sel_ret " << sel_ret_bio(s, f, g) << endl << " sel_dead " << sel_dead_bio(s, f, g) << endl;
break;
}
case 3: // all selected fish are dead; use this for a discard only fleet
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