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switch to json format for nextflow inspect#4271

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mashehu wants to merge 13 commits into
nf-core:devfrom
mashehu:switch-to-nextflow-config-json
Open

switch to json format for nextflow inspect#4271
mashehu wants to merge 13 commits into
nf-core:devfrom
mashehu:switch-to-nextflow-config-json

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@mashehu
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@mashehu mashehu commented May 7, 2026

Closes #4204

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codecov Bot commented May 7, 2026

Codecov Report

❌ Patch coverage is 87.76978% with 17 lines in your changes missing coverage. Please review.
✅ Project coverage is 78.28%. Comparing base (3411f6b) to head (f8fe5dd).

Files with missing lines Patch % Lines
nf_core/pipelines/lint/nextflow_config.py 90.56% 5 Missing ⚠️
nf_core/pipelines/schema.py 85.29% 5 Missing ⚠️
nf_core/pipelines/lint/files_unchanged.py 60.00% 4 Missing ⚠️
nf_core/pipelines/lint/files_exist.py 75.00% 1 Missing ⚠️
nf_core/pipelines/lint/version_consistency.py 83.33% 1 Missing ⚠️
nf_core/test_datasets/test_datasets_utils.py 0.00% 1 Missing ⚠️

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@mashehu mashehu force-pushed the switch-to-nextflow-config-json branch from 591bc29 to 52aa632 Compare May 8, 2026 09:21
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