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Minor template fixes #4145

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muffato wants to merge 2 commits into from
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Minor template fixes #4145

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f169a10
Unnecessary mentions of nf-core
muffato Mar 29, 2026
d2ea5a9
Jinja template bugfix
muffato Mar 29, 2026
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2 changes: 1 addition & 1 deletion nf_core/pipeline-template/.github/workflows/branch.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ jobs:
test:
runs-on: ubuntu-latest
steps:
# PRs to the nf-core repo main/master branch are only ok if coming from the nf-core repo `dev` or any `patch` branches
# PRs to the {{name}} repo main/master branch are only ok if coming from its `dev` or any `patch` branches
- name: Check PRs
if: github.repository == '{{ name }}'
run: |
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4 changes: 2 additions & 2 deletions nf_core/pipeline-template/.github/workflows/download_pipeline.yml
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Expand Up @@ -32,7 +32,7 @@ jobs:
run: |
echo "REPO_LOWERCASE=${GITHUB_REPOSITORY,,}" >> "$GITHUB_OUTPUT"
echo "REPOTITLE_LOWERCASE=$(basename ${GITHUB_REPOSITORY,,})" >> "$GITHUB_OUTPUT"
echo "REPO_BRANCH=${{ github.event.inputs.testbranch || 'dev' }}" >> "$GITHUB_OUTPUT{% endraw %}"
echo "REPO_BRANCH=${{ github.event.inputs.testbranch || 'dev' }}" >> "$GITHUB_OUTPUT"

download:
runs-on: ubuntu-latest
Expand Down Expand Up @@ -71,7 +71,7 @@ jobs:

- name: Download the pipeline
env:
NXF_SINGULARITY_CACHEDIR: ./singularity_container_images{% raw %}
NXF_SINGULARITY_CACHEDIR: ./singularity_container_images
run: |
nf-core pipelines download ${{ needs.configure.outputs.REPO_LOWERCASE }} \
--revision ${{ needs.configure.outputs.REPO_BRANCH }} \
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