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TEMPLATE: add a fallback for new outputdir parameter#3798

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mashehu merged 7 commits intonf-core:devfrom
mashehu:add-outputdir-fallback
Mar 17, 2026
Merged

TEMPLATE: add a fallback for new outputdir parameter#3798
mashehu merged 7 commits intonf-core:devfrom
mashehu:add-outputdir-fallback

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@mashehu mashehu commented Oct 3, 2025

closes ##3707

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codecov Bot commented Oct 3, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 78.39%. Comparing base (9df2b3b) to head (4ecf6b5).
⚠️ Report is 4 commits behind head on dev.

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Changes look good, but should we add linting as the issue suggests? I think it would be better to postpone these PRs until we add the publish section in the workflow.

@mashehu mashehu added this to the 3.5.0 milestone Oct 7, 2025
@mashehu mashehu removed this from the 3.5.0 milestone Nov 18, 2025
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what is the state of this? is it ready to be merged?

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mashehu commented Mar 6, 2026

what do you think @maxulysse

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Comment thread nf_core/pipeline-template/nextflow.config Outdated
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is this ready to be merged now?

@mashehu mashehu merged commit d6d6e14 into nf-core:dev Mar 17, 2026
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4 participants