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Make the QUARTONOTEBOOK module handle collected data (samples) instead of working in a per-sample basis, as multiple inputs are desired for the QC reporting. The changes are applied through a module patch.
FIX qcreport fail on macOS
This reverts commit 26956ce.
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This PR adds an HTML QC report using Quarto. It currently takes the available outputs of the pipeline and collects them into a single, curated report, along with small explanations and the nf-core visual identity. More functionality is desired, but will require changes/additions to the pipeline itself (e.g. adding ribosomal content), so will be added in future PRs.
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).