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| conda "conda-forge::wget=1.20.1" | ||
| conda "conda-forge::wget=1.21.4" | ||
| container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? | ||
| 'https://depot.galaxyproject.org/singularity/wget:1.20.1' : |
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Is there a reason, why the wget singularity container version is not changed?
The container https://depot.galaxyproject.org/singularity/wget:1.20.1 would be inconsistent with the docker and conda environments or am I missing something?
In issue 328 which you are mentioning people are using singularity. In a quick test changing the container to https://depot.galaxyproject.org/singularity/wget:1.21.4 resolves the issue for me.
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Addressing wget not resolving address and refused connections by EMBL like in issues fetchngs test fails #336, 1.11.0 works while 1.12.0 fails for apptainer+wget ( wget: unable to resolve host address 'ftp.sra.ebi.ac.uk' ) #328 and wget host address error #291.
wget container fails to load /etc/resolv.conf in old containers, bumped version like @josemunozc in issue wget host address error #291.
PR checklist
nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).