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Regenerate uv.lock file with pytest-cov

dependenciesDependency updates and their version upgrades.Dependency updates and their version upgrades.

quick fixMinimal planning and/or implementation work required.Minimal planning and/or implementation work required.

Status: Open.

Maintenance

#242 In neurobagel/federation-api;

· alyssadai opened on Apr 10, 2026

add test runners for python 3.11-3.13

testsEnhancing or fixing tests where functioning is not affected.Enhancing or fixing tests where functioning is not affected.

Status: Open.

Maintenance

#241 In neurobagel/federation-api;

· surchs opened on Apr 9, 2026

Exit and error if local_nb_nodes.json file is missing

Status: Open.

Enhancement

#225 In neurobagel/federation-api;

· alyssadai opened on Feb 5, 2026

Officially deprecate GET /query endpoint

_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again

deprecationDeprecation and removal of features that are no longer needed.Deprecation and removal of features that are no longer needed.

Status: Open.

Maintenance

#220 In neurobagel/federation-api;

· alyssadai opened on Jan 7, 2026

Log unrecognized/deprecated fields in node responses

_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again

usabilityIssue affecting user or developer experience.Issue affecting user or developer experience.

Status: Open.

Enhancement

#219 In neurobagel/federation-api;

· alyssadai opened on Jan 7, 2026

Revisit default values for list query parameters/fields

_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again

refactorSimplifying or restructuring existing code or documentation.Simplifying or restructuring existing code or documentation.

Status: Open.

Maintenance

#198 In neurobagel/federation-api;

· alyssadai opened on Oct 16, 2025

Remove lint.yml workflow in favour of pre-commit

_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again

processImprovement to internal processesImprovement to internal processes

Status: Open.

Maintenance

#192 In neurobagel/federation-api;

· alyssadai opened on Sep 10, 2025

Fix dependency conflict with starlette

_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again

dependenciesDependency updates and their version upgrades.Dependency updates and their version upgrades.

Status: Open.

Bug

#176 In neurobagel/federation-api;

· surchs opened on Apr 22, 2025

Switch to pydantic-settings for environment variable management

_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again

dependenciesDependency updates and their version upgrades.Dependency updates and their version upgrades.

Status: Open.

Maintenance

#166 In neurobagel/federation-api;

· alyssadai opened on Mar 12, 2025

Misconfigured f-API can create infinite request loop

documentationChanges only affect the documentationChanges only affect the documentation

somedayNot a priority right now, but we want to keep this around to think or discuss more.Not a priority right now, but we want to keep this around to think or discuss more.

Status: Open.

Bug

#89 In neurobagel/federation-api;

· surchs opened on May 23, 2024

Decide how/whether to handle duplicate datasets across nodes

_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again

flag:discussFlag issue that needs to be discussed before it can be implemented.Flag issue that needs to be discussed before it can be implemented.

Status: Open.

#80 In neurobagel/federation-api;

· alyssadai opened on Apr 11, 2024

Check for equivalence of term labels for duplicate TermURLs across nodes

_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again

Status: Open.

#68 In neurobagel/federation-api;

· alyssadai opened on Feb 4, 2024