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orjson dependency fails to install in Python 3.13

dependenciesDependency updates and their version upgrades.Dependency updates and their version upgrades.

Status: Open.

Bug

#548 In neurobagel/api;

· alyssadai opened on Mar 9, 2026

Add test runners for Python 3.11-3.13

testsEnhancing or fixing tests where functioning is not affected.Enhancing or fixing tests where functioning is not affected.

Status: Open.

Maintenance

#546 In neurobagel/api;

· alyssadai opened on Mar 9, 2026

Environment Setup: pandas==1.5.2 fails to install on Python 3.12

dependenciesDependency updates and their version upgrades.Dependency updates and their version upgrades.

Status: Open.

Bug

#536 In neurobagel/api;

· sejalpunwatkar opened on Feb 27, 2026

Add caching for vocabulary fetching to improve API startup reliability

Status: Open.

#534 In neurobagel/api;

· SarthakJagota opened on Feb 26, 2026

Adopt uv for dependency management

dependenciesDependency updates and their version upgrades.Dependency updates and their version upgrades.

processImprovement to internal processesImprovement to internal processes

Status: Open.

Maintenance

#527 In neurobagel/api;

· surchs opened on Jan 30, 2026

Officially deprecate legacy GET /query endpoint for POST /subjects

deprecationDeprecation and removal of features that are no longer needed.Deprecation and removal of features that are no longer needed.

Status: Open.

Maintenance

#520 In neurobagel/api;

· alyssadai opened on Dec 22, 2025

Switch to 3.9+ type annotations syntax everywhere

refactorSimplifying or restructuring existing code or documentation.Simplifying or restructuring existing code or documentation.

Status: Open.

Maintenance

#518 In neurobagel/api;

· alyssadai opened on Dec 22, 2025

Revisit what POST /subjects response should be for a protected/aggregated node

_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again

flag:discussFlag issue that needs to be discussed before it can be implemented.Flag issue that needs to be discussed before it can be implemented.

Status: Open.

Exploration

#516 In neurobagel/api;

· alyssadai opened on Dec 19, 2025

Consider standardizing the fields between the instances endpoints

_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again

Status: Open.

#514 In neurobagel/api;

· rmanaem opened on Dec 5, 2025

Align identifiers in code to current Neurobagel naming conventions

refactorSimplifying or restructuring existing code or documentation.Simplifying or restructuring existing code or documentation.

Status: Open.

Maintenance

#512 In neurobagel/api;

· alyssadai opened on Dec 3, 2025

Make API version and node info discoverable

Status: Open.

#511 In neurobagel/api;

· rmanaem opened on Dec 3, 2025

Disallow extra parameters or fields in queries

_flag:stale[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again[BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again

refactorSimplifying or restructuring existing code or documentation.Simplifying or restructuring existing code or documentation.

Status: Open.

Maintenance

#492 In neurobagel/api;

· alyssadai opened on Nov 3, 2025