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Welcome to the documentation wiki! This page provides access to all documentation for processes and software used within NeuralABC.

Essential resources

Brain Structure and Function

• Neuroanatomy and Neuroscience Resources
• Interactive functional networks on the web Neurosynth

Introduction to Principles of MRI

Open source book from the Larson Lab

• Blurb and Book

KINARM

• Introduction and programming resources for Matlab and Simulink / Stateflow
  • KINARM Resources

Resources for New Students

• Getting Keys and SP/PERFORM keycard access
• Applying for travel awards (Graduate Students)

Resources for publishing in reasonably priced journals

List of publishing venues that are supported within the university (some 100%, most only partial)

• Institutional memberships and discounts for Concordia authors
• Cross university list of OA publication discounts

General: Finding OA journals to publish in

• Journal Finders
• Manuscript matcher

Working with the machines in the lab

A comprehensive overview

1. Intro Guide: Welcome
2. Intro Guide: Python
3. Intro Guide: Additional Resources

Using the VPN

• Setting up VPN access to lab computers

Graphical Visualization from Home

• Remote Desktop connection via X2Go

Running processes while logged out

• Running multiple persistent terminal sessions with tmux: (What is tmux?)
• See here for a lab-based overview of tmux

MRI manipulation

• Applying ANTs Transforms
• Data manipulation and storage - Dicom to BIDS format conversion

Experimental setups, code, and instructions

• SPFT (Sequential Pinch-Force Task)
• Kinarm Exoskeleton: Learning and Task Programming Resources

Useful code snippets and descriptions

• Generating parcels and computing summaries for subsequent analysis
• Bayesian analysis with pymc3