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| # dFC | |||
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more details needed. For example, you can explain each method, or what steps should be done to run your own data etc.
jeromedockes
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jeromedockes
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first batch of small comments, mostly details for now
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| from functions.dFC_funcs import * | |||
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in general avoid import * as it pollutes the namespace and makes it hard to know where names come from.
linting tools will complain about it; it's a good idea to use them -- have a look for example at pylint and flake8
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| #!/usr/bin/env python3 | |||
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if this is a module meant to be imported you don't need a shebang
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| #!/usr/bin/env python3 | |||
| # -*- coding: utf-8 -*- | |||
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utf-8 is the default: https://peps.python.org/pep-3120/
| """ | ||
| Created on Sun Jun 13 22:34:49 2021 | ||
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| @author: mte |
| import networkx as nx | ||
| from scipy.spatial import distance | ||
| from joblib import Parallel, delayed | ||
| import os |
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put standard lib imports before other imports (see pep8)
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| ###### DATA PARAMETERS ###### | ||
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| output_root = './../../../../../RESULTs/methods_implementation/' |
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- consider putting paths in env variables or a config files rather than source files
- use pathlib to manipulate filesystem paths
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| # DATA_type is either 'sample' or 'Gordon' or 'simulated' or 'ICA' | ||
| params_data_load = { \ | ||
| 'DATA_type': 'Gordon', \ |
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| @author: mte | ||
| """ | ||
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you could add a setup.py to make it possible to install the package so you don't have to manipulate the python path in your notebook
| Clustering_pear_corr | ||
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| if name_lst_key is None: |
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try to keep function short; they should at least fit on a screen ie less than ~40 lines (there may be rare exceptions), and in most cases be even much shorter than that (~5-10 lines)
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| plt.show() | ||
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| ''' |
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is this to comment out code?
trust version control and delete the code you don't need instead of commenting it out
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what testing framework do you use?
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