Frequency of ALL splits

[ms609]

No description provided.

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⚠️ This benchmark result is outdated. See the latest comment below.

Performance benchmark results

Call	Status	Change	Time (ms)
as.Splits(bigTrees)	⚪ NSD	-2.65%	29 → 29.8, 30
as.Splits(someTrees)	⚪ NSD	0.37%	9.98 → 9.91, 9.97
Consensus(forest1k.888, check = FALSE)	⚪ NSD	0.81%	85.8 → 85.6, 84.6
Consensus(forest201.80, check = FALSE)	⚪ NSD	1.29%	3.95 → 3.89, 3.9
Consensus(forest21.260, 0.5, FALSE)	⚪ NSD	0.25%	1.12 → 1.12, 1.12
Consensus(forest21.260)	⚪ NSD	0.32%	1.12 → 1.12, 1.11
Consensus(forestMaj, 0.5, FALSE)	⚪ NSD	0.72%	2.84 → 2.82, 2.82
DropTip(tr2000, 5)	⚪ NSD	0.07%	25.5 → 25.4, 25.6
DropTip(tr80, 5)	⚪ NSD	-0.43%	0.0883 → 0.0896, 0.0879
DropTip(unlen2k, 5)	⚪ NSD	1.69%	0.201 → 0.197, 0.198
DropTip(unlen80, 5)	⚪ NSD	0.93%	0.0342 → 0.0338, 0.0338
lapply(bigSplits, as.phylo)	⚪ NSD	-0.52%	29.3 → 29.3, 29.5
lapply(someSplits, as.phylo)	⚪ NSD	-1.74%	11.7 → 12, 11.9
PathLengths(tr2000, full = TRUE)	⚪ NSD	0.61%	24 → 23.8, 23.8
PathLengths(tr80, full = TRUE)	⚪ NSD	3.54%	0.0775 → 0.0764, 0.0337
PathLengths(tr80Unif, full = TRUE)	⚪ NSD	-137.37%	0.0319 → 0.0781, 0.0327
RootTree(tr2000, 5)	⚪ NSD	-0.16%	0.311 → 0.31, 0.312
RootTree(tr80, c("t3", "t36"))	⚪ NSD	-0.31%	0.0558 → 0.0559, 0.0561
RootTree(tr80, "t3")	⚪ NSD	0.68%	0.0395 → 0.0393, 0.0392
RootTree(tr80, "t30")	⚪ NSD	0.18%	0.0394 → 0.0394, 0.0393
RootTree(unlen2k, 5)	⚪ NSD	-0.92%	0.295 → 0.3, 0.296
RootTree(unlen80, c("t3", "t36"))	⚪ NSD	0.57%	0.052 → 0.0518, 0.0516
RootTree(unlen80, "t3")	⚪ NSD	0.88%	0.035 → 0.0349, 0.0345
RootTree(unlen80, "t30")	⚪ NSD	0.09%	0.0348 → 0.0348, 0.0347
TreeDist::RobinsonFoulds(forest201.80)	⚪ NSD	1.51%	14.8 → 14.6, 15.1
TreeDist::RobinsonFoulds(forest21.888)	⚪ NSD	0.37%	2.89 → 2.89, 2.86
TreeTools:::path_lengths(tr80$edge, tr80$edge.length, FALSE)	⚪ NSD	-0.08%	0.0696 → 0.0699, 0.0695
TreeTools:::postorder_order(bal40)	⚪ NSD	-0.82%	0.00132 → 0.00133, 0.00133
TreeTools:::postorder_order(bal40k)	⚪ NSD	0.64%	0.316 → 0.312, 0.316
TreeTools:::postorder_order(dbal40)	⚪ NSD	-0.8%	0.0015 → 0.00152, 0.0015
TreeTools:::postorder_order(dbal40k)	⚪ NSD	-0.34%	2.22 → 2.22, 2.23
TreeTools:::postorder_order(dpec40)	⚪ NSD	-0.9%	0.00254 → 0.00257, 0.00255
TreeTools:::postorder_order(dpec40k)	🟣 ~same	-1%	4200 → 4240, 4240
TreeTools:::postorder_order(drnd80)	⚪ NSD	-0.19%	0.00408 → 0.0041, 0.00405
TreeTools:::postorder_order(nbal40)	⚪ NSD	-1.45%	0.00186 → 0.00188, 0.00189
TreeTools:::postorder_order(nbal40k)	⚪ NSD	-0.03%	2.42 → 2.41, 2.43
TreeTools:::postorder_order(npec40)	⚪ NSD	-0.81%	0.00285 → 0.00288, 0.00286
TreeTools:::postorder_order(npec40k)	🟣 ~same	-0.92%	4210 → 4270, 4240
TreeTools:::postorder_order(nrnd80)	⚪ NSD	-0.91%	0.00475 → 0.00475, 0.00483
TreeTools:::postorder_order(pec40)	⚪ NSD	-1.44%	0.00133 → 0.00137, 0.00134
TreeTools:::postorder_order(pec40k)	⚪ NSD	0%	0.312 → 0.31, 0.314
TreeTools:::postorder_order(rnd80)	⚪ NSD	0.06%	0.00161 → 0.0016, 0.00161

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 96.20%. Comparing base (49064ee) to head (8e857c6).
⚠️ Report is 2 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #250      +/-   ##
==========================================
+ Coverage   96.19%   96.20%   +0.01%     
==========================================
  Files          75       75              
  Lines        5466     5481      +15     
==========================================
+ Hits         5258     5273      +15     
  Misses        208      208              

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Performance benchmark results

Call	Status	Change	Time (ms)
as.Splits(bigTrees)	⚪ NSD	-4.97%	21.8 → 23.2, 21.1
as.Splits(someTrees)	⚪ NSD	0.03%	11.3 → 11, 11.3
Consensus(forest1k.888, check = FALSE)	⚪ NSD	-1.45%	95.5 → 97.4, 96.9
Consensus(forest201.80, check = FALSE)	⚪ NSD	-0.56%	4 → 4.04, 4.01
Consensus(forest21.260, 0.5, FALSE)	⚪ NSD	-0.67%	1.22 → 1.23, 1.23
Consensus(forest21.260)	⚪ NSD	-1.04%	1.23 → 1.25, 1.24
Consensus(forestMaj, 0.5, FALSE)	⚪ NSD	-0.53%	2.94 → 2.97, 2.95
DropTip(tr2000, 5)	🟣 ~same	2.95%	17 → 16.5, 16.5
DropTip(tr80, 5)	⚪ NSD	1.98%	0.106 → 0.103, 0.105
DropTip(unlen2k, 5)	⚪ NSD	1.26%	0.215 → 0.21, 0.214
DropTip(unlen80, 5)	⚪ NSD	1.45%	0.0406 → 0.0401, 0.04
lapply(bigSplits, as.phylo)	⚪ NSD	0.13%	31.2 → 30.9, 31.4
lapply(someSplits, as.phylo)	⚪ NSD	0.67%	14 → 13.9, 14
PathLengths(tr2000, full = TRUE)	⚪ NSD	1.78%	16.5 → 16.2, 16.2
PathLengths(tr80, full = TRUE)	⚪ NSD	-5.36%	0.0286 → 0.0431, 0.0278
PathLengths(tr80Unif, full = TRUE)	⚪ NSD	-7.89%	0.0297 → 0.0703, 0.0295
RootTree(tr2000, 5)	⚪ NSD	0.19%	0.391 → 0.39, 0.39
RootTree(tr80, c("t3", "t36"))	⚪ NSD	0.17%	0.0699 → 0.0692, 0.0702
RootTree(tr80, "t3")	⚪ NSD	1.16%	0.0499 → 0.0496, 0.0489
RootTree(tr80, "t30")	⚪ NSD	0.52%	0.0501 → 0.0501, 0.0494
RootTree(unlen2k, 5)	⚪ NSD	0.44%	0.324 → 0.322, 0.324
RootTree(unlen80, c("t3", "t36"))	⚪ NSD	0.19%	0.0638 → 0.0632, 0.0641
RootTree(unlen80, "t3")	⚪ NSD	0.49%	0.0427 → 0.0427, 0.0422
RootTree(unlen80, "t30")	⚪ NSD	0.47%	0.043 → 0.0429, 0.0426
TreeDist::RobinsonFoulds(forest201.80)	⚪ NSD	1.37%	16.7 → 16.6, 16.3
TreeDist::RobinsonFoulds(forest21.888)	⚪ NSD	-0.07%	3.37 → 3.38, 3.35
TreeTools:::path_lengths(tr80$edge, tr80$edge.length, FALSE)	⚪ NSD	-1.62%	0.102 → 0.105, 0.102
TreeTools:::postorder_order(bal40)	⚪ NSD	-8.02%	0.00174 → 0.00174, 0.00194
TreeTools:::postorder_order(bal40k)	⚪ NSD	0.68%	0.43 → 0.427, 0.428
TreeTools:::postorder_order(dbal40)	⚪ NSD	-6.85%	0.00188 → 0.00185, 0.00207
TreeTools:::postorder_order(dbal40k)	⚪ NSD	-0.94%	2.34 → 2.35, 2.38
TreeTools:::postorder_order(dpec40)	⚪ NSD	-4.55%	0.0031 → 0.00306, 0.00329
TreeTools:::postorder_order(dpec40k)	⚪ NSD	0.01%	3610 → 3610, 3610
TreeTools:::postorder_order(drnd80)	⚪ NSD	-0.02%	0.00516 → 0.00514, 0.00519
TreeTools:::postorder_order(nbal40)	⚪ NSD	-3.62%	0.00223 → 0.00218, 0.00239
TreeTools:::postorder_order(nbal40k)	⚪ NSD	0.36%	2.41 → 2.4, 2.4
TreeTools:::postorder_order(npec40)	⚪ NSD	-3.54%	0.00339 → 0.00336, 0.00355
TreeTools:::postorder_order(npec40k)	⚪ NSD	0.25%	3640 → 3630, 3620
TreeTools:::postorder_order(nrnd80)	⚪ NSD	-0.16%	0.00571 → 0.00572, 0.00572
TreeTools:::postorder_order(pec40)	⚪ NSD	-9.8%	0.00172 → 0.00171, 0.00194
TreeTools:::postorder_order(pec40k)	⚪ NSD	0.19%	0.429 → 0.425, 0.43
TreeTools:::postorder_order(rnd80)	⚪ NSD	-0.46%	0.00217 → 0.00217, 0.00219