SplitInformation.Splits()

[ms609]

No description provided.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 96.19%. Comparing base (a810f53) to head (3b25565).
⚠️ Report is 63 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #249      +/-   ##
==========================================
- Coverage   96.53%   96.19%   -0.35%     
==========================================
  Files          74       75       +1     
  Lines        5341     5466     +125     
==========================================
+ Hits         5156     5258     +102     
- Misses        185      208      +23     

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[github-actions]

Performance benchmark results

Call	Status	Change	Time (ms)
as.Splits(bigTrees)	⚪ NSD	-6.4%	21.6 → 23, 21.4
as.Splits(someTrees)	⚪ NSD	-0.7%	10.9 → 11.1, 10.9
Consensus(forest1k.888, check = FALSE)	⚪ NSD	5.1%	100 → 95.7, 94.2
Consensus(forest201.80, check = FALSE)	⚪ NSD	0.7%	4.01 → 3.99, 3.97
Consensus(forest21.260, 0.5, FALSE)	⚪ NSD	0.98%	1.23 → 1.22, 1.22
Consensus(forest21.260)	⚪ NSD	0.8%	1.24 → 1.23, 1.23
Consensus(forestMaj, 0.5, FALSE)	⚪ NSD	1.86%	2.97 → 2.91, 2.92
DropTip(tr2000, 5)	⚪ NSD	-1.18%	16.2 → 16.6, 16.3
DropTip(tr80, 5)	⚪ NSD	-2.12%	0.101 → 0.103, 0.103
DropTip(unlen2k, 5)	⚪ NSD	-0.6%	0.211 → 0.212, 0.213
DropTip(unlen80, 5)	⚪ NSD	-1.32%	0.0394 → 0.0399, 0.04
lapply(bigSplits, as.phylo)	⚪ NSD	0.65%	31.1 → 30.9, 31
lapply(someSplits, as.phylo)	⚪ NSD	-0.47%	13.8 → 13.7, 13.9
PathLengths(tr2000, full = TRUE)	⚪ NSD	-0.94%	15.5 → 15.7, 15.6
PathLengths(tr80, full = TRUE)	⚪ NSD	71.47%	0.112 → 0.113, 0.029
PathLengths(tr80Unif, full = TRUE)	⚪ NSD	68.81%	0.113 → 0.115, 0.0309
RootTree(tr2000, 5)	⚪ NSD	-3.41%	0.371 → 0.393, 0.373
RootTree(tr80, c("t3", "t36"))	⚪ NSD	-2.31%	0.0674 → 0.0691, 0.0687
RootTree(tr80, "t3")	⚪ NSD	-1.98%	0.0481 → 0.0492, 0.0489
RootTree(tr80, "t30")	⚪ NSD	-1.17%	0.0486 → 0.0496, 0.0487
RootTree(unlen2k, 5)	⚪ NSD	1.41%	0.333 → 0.326, 0.329
RootTree(unlen80, c("t3", "t36"))	⚪ NSD	-1.08%	0.0622 → 0.063, 0.0628
RootTree(unlen80, "t3")	⚪ NSD	-0.59%	0.0421 → 0.0423, 0.0424
RootTree(unlen80, "t30")	⚪ NSD	0.38%	0.0423 → 0.0423, 0.042
TreeDist::RobinsonFoulds(forest201.80)	⚪ NSD	-0.48%	16 → 16, 16.2
TreeDist::RobinsonFoulds(forest21.888)	⚪ NSD	0.71%	3.34 → 3.29, 3.32
TreeTools:::path_lengths(tr80$edge, tr80$edge.length, FALSE)	⚪ NSD	-1.02%	0.101 → 0.101, 0.104
TreeTools:::postorder_order(bal40)	⚪ NSD	-0.65%	0.00171 → 0.00172, 0.00173
TreeTools:::postorder_order(bal40k)	🟢 Faster!	23.41%	0.56 → 0.429, 0.429
TreeTools:::postorder_order(dbal40)	⚪ NSD	-0.54%	0.00184 → 0.00183, 0.00186
TreeTools:::postorder_order(dbal40k)	⚪ NSD	0.53%	2.38 → 2.37, 2.37
TreeTools:::postorder_order(dpec40)	⚪ NSD	0%	0.00308 → 0.00306, 0.0031
TreeTools:::postorder_order(dpec40k)	⚪ NSD	0.1%	3610 → 3610, 3610
TreeTools:::postorder_order(drnd80)	⚪ NSD	0.58%	0.00517 → 0.00513, 0.00515
TreeTools:::postorder_order(nbal40)	⚪ NSD	-0.42%	0.00216 → 0.00213, 0.00218
TreeTools:::postorder_order(nbal40k)	⚪ NSD	-0.05%	2.39 → 2.39, 2.39
TreeTools:::postorder_order(npec40)	⚪ NSD	-0.9%	0.00333 → 0.00334, 0.00338
TreeTools:::postorder_order(npec40k)	🟣 ~same	-0.11%	3620 → 3620, 3620
TreeTools:::postorder_order(nrnd80)	⚪ NSD	-0.35%	0.00569 → 0.00567, 0.00574
TreeTools:::postorder_order(pec40)	⚪ NSD	-0.59%	0.00171 → 0.00171, 0.00173
TreeTools:::postorder_order(pec40k)	⚪ NSD	22.64%	0.553 → 0.43, 0.425
TreeTools:::postorder_order(rnd80)	⚪ NSD	-0.47%	0.00216 → 0.00216, 0.00219