RenumberTree(): numeric tipOrder

[ms609]

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Performance benchmark results

Call	Status	Change	Time (ms)
as.Splits(bigTrees)	⚪ NSD	2.8%	24.4 → 23.6, 24.8
as.Splits(someTrees)	⚪ NSD	-0.55%	11 → 11, 11.1
Consensus(forest1k.888, check = FALSE)	⚪ NSD	1.7%	97.8 → 95, 96.6
Consensus(forest201.80, check = FALSE)	⚪ NSD	0.81%	4.03 → 3.96, 4.03
Consensus(forest21.260, 0.5, FALSE)	⚪ NSD	0.82%	1.24 → 1.21, 1.24
Consensus(forest21.260)	⚪ NSD	-0.29%	1.24 → 1.22, 1.25
Consensus(forestMaj, 0.5, FALSE)	⚪ NSD	1.47%	3 → 2.91, 2.97
DropTip(tr2000, 5)	⚪ NSD	-1.12%	20.3 → 20.5, 20.4
DropTip(tr80, 5)	⚪ NSD	0.86%	0.105 → 0.104, 0.104
DropTip(unlen2k, 5)	⚪ NSD	-1.33%	0.213 → 0.21, 0.221
DropTip(unlen80, 5)	⚪ NSD	-0.55%	0.0402 → 0.04, 0.0408
lapply(bigSplits, as.phylo)	⚪ NSD	-0.62%	30.4 → 30.7, 30.6
lapply(someSplits, as.phylo)	⚪ NSD	0.15%	14.2 → 14.2, 14.1
PathLengths(tr2000, full = TRUE)	⚪ NSD	0.25%	19.5 → 19.5, 19.5
PathLengths(tr80, full = TRUE)	⚪ NSD	-0.39%	0.1 → 0.0982, 0.103
PathLengths(tr80Unif, full = TRUE)	⚪ NSD	-241.1%	0.0299 → 0.0999, 0.104
RootTree(tr2000, 5)	⚪ NSD	-0.08%	0.372 → 0.371, 0.373
RootTree(tr80, c("t3", "t36"))	⚪ NSD	0.1%	0.0691 → 0.0693, 0.0687
RootTree(tr80, "t3")	⚪ NSD	-0.56%	0.0487 → 0.0493, 0.0487
RootTree(tr80, "t30")	⚪ NSD	-0.86%	0.0489 → 0.0499, 0.0487
RootTree(unlen2k, 5)	⚪ NSD	-0.57%	0.33 → 0.331, 0.335
RootTree(unlen80, c("t3", "t36"))	⚪ NSD	-1.07%	0.0637 → 0.0648, 0.064
RootTree(unlen80, "t3")	⚪ NSD	-0.4%	0.043 → 0.0434, 0.043
RootTree(unlen80, "t30")	⚪ NSD	-0.74%	0.0433 → 0.0439, 0.0433
TreeDist::RobinsonFoulds(forest201.80)	⚪ NSD	-0.29%	15.4 → 15.4, 15.5
TreeDist::RobinsonFoulds(forest21.888)	⚪ NSD	-0.23%	3.25 → 3.27, 3.22
TreeTools:::path_lengths(tr80$edge, tr80$edge.length, FALSE)	⚪ NSD	-0.35%	0.0907 → 0.0904, 0.0916
TreeTools:::postorder_order(bal40)	⚪ NSD	1.8%	0.00167 → 0.00164, 0.00164
TreeTools:::postorder_order(bal40k)	⚪ NSD	0.22%	0.442 → 0.442, 0.44
TreeTools:::postorder_order(dbal40)	⚪ NSD	0.01%	0.00171 → 0.00172, 0.0017
TreeTools:::postorder_order(dbal40k)	⚪ NSD	0.94%	2.15 → 2.13, 2.13
TreeTools:::postorder_order(dpec40)	⚪ NSD	-0.04%	0.00252 → 0.00254, 0.00252
TreeTools:::postorder_order(dpec40k)	🟣 ~same	-0.09%	3380 → 3380, 3380
TreeTools:::postorder_order(drnd80)	⚪ NSD	-2.52%	0.00401 → 0.00416, 0.004
TreeTools:::postorder_order(nbal40)	⚪ NSD	0.96%	0.00208 → 0.00205, 0.00208
TreeTools:::postorder_order(nbal40k)	⚪ NSD	0.21%	2.18 → 2.17, 2.19
TreeTools:::postorder_order(npec40)	⚪ NSD	-0.32%	0.00281 → 0.00283, 0.00279
TreeTools:::postorder_order(npec40k)	🟣 ~same	-0.69%	3400 → 3420, 3430
TreeTools:::postorder_order(nrnd80)	⚪ NSD	0.02%	0.00456 → 0.00458, 0.00453
TreeTools:::postorder_order(pec40)	⚪ NSD	0.61%	0.00165 → 0.00165, 0.00162
TreeTools:::postorder_order(pec40k)	⚪ NSD	-1.21%	0.431 → 0.436, 0.437
TreeTools:::postorder_order(rnd80)	⚪ NSD	1.43%	0.0021 → 0.00211, 0.00202