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Abra2 collapses genomic duplication in assembly, leading to false realignments

Status: Open.

#47 In mozack/abra;

· fbattke opened on Apr 23, 2025

java.lang.IllegalStateException

Status: Open.

#46 In mozack/abra;

· lovelycatZ opened on Oct 20, 2022

build issue

Status: Open.

#45 In mozack/abra;

· BJWiley233 opened on Jan 26, 2021

Is it possible to get the assembled contig?

Status: Open.

#42 In mozack/abra;

· juberpatel opened on Apr 26, 2018

Change header in bam

Status: Open.

#37 In mozack/abra;

· FedikZe opened on Feb 28, 2018

Abra error

Status: Open.

#36 In mozack/abra;

· yuhongning opened on Jun 27, 2017

Amplicon data

Status: Open.

#31 In mozack/abra;

· mcgml opened on Oct 4, 2016

[Request] Replace System.out.print* statements with System.err.print* for stream compatibility

Status: Open.

#29 In mozack/abra;

· dnbaker opened on Jun 22, 2016

Error in Cadabra

Status: Open.

#28 In mozack/abra;

· GKerdivel opened on Jun 15, 2016

Exception in thread Error

Status: Open.

#26 In mozack/abra;

· tinuthomas opened on May 13, 2016

polyA/polyT/lowcomplexity region realignments for single ended reads

Status: Open.

#25 In mozack/abra;

· avilella opened on Feb 22, 2016

[fwrite] Remote I/O error

Status: Open.

#24 In mozack/abra;

· bcantarel opened on Dec 21, 2015