fix(filesystem): handle Windows EPERM when renaming over locked files

src/filesystem/__tests__/lib.test.ts

@@ -279,11 +279,66 @@ describe('Lib Functions', () => {
     describe('writeFileContent', () => {
       it('writes file content', async () => {
         mockFs.writeFile.mockResolvedValueOnce(undefined);
-        
+
         await writeFileContent('/test/file.txt', 'new content');
-        
+
         expect(mockFs.writeFile).toHaveBeenCalledWith('/test/file.txt', 'new content', { encoding: "utf-8", flag: 'wx' });
       });
+
+      it('falls back to fs.cp when fs.rename fails with EPERM (Windows locked file)', async () => {
+        // First write fails because file exists
+        const eexistError = new Error('EEXIST') as NodeJS.ErrnoException;
+        eexistError.code = 'EEXIST';
+
+        // Rename fails with EPERM (Windows file lock)
+        const epermError = new Error('EPERM') as NodeJS.ErrnoException;
+        epermError.code = 'EPERM';
+
+        mockFs.writeFile
+          .mockRejectedValueOnce(eexistError)  // First write fails (file exists)
+          .mockResolvedValueOnce(undefined);    // Temp file write succeeds
+        mockFs.rename.mockRejectedValueOnce(epermError);
+        mockFs.cp.mockResolvedValueOnce(undefined);
+        mockFs.unlink.mockResolvedValueOnce(undefined);
+
+        await writeFileContent('/test/file.txt', 'new content');
+
+        // Should have tried rename first, then fallen back to cp + unlink
+        expect(mockFs.rename).toHaveBeenCalledWith(
+          expect.stringMatching(/\/test\/file\.txt\.[a-f0-9]+\.tmp$/),
+          '/test/file.txt'
+        );
+        expect(mockFs.cp).toHaveBeenCalledWith(
+          expect.stringMatching(/\/test\/file\.txt\.[a-f0-9]+\.tmp$/),
+          '/test/file.txt',
+          { force: true }
+        );
+        expect(mockFs.unlink).toHaveBeenCalledWith(
+          expect.stringMatching(/\/test\/file\.txt\.[a-f0-9]+\.tmp$/)
+        );
+      });
+
+      it('propagates non-EPERM errors from fs.rename', async () => {
+        // First write fails because file exists
+        const eexistError = new Error('EEXIST') as NodeJS.ErrnoException;
+        eexistError.code = 'EEXIST';
+
+        // Rename fails with EACCES (not EPERM)
+        const eaccesError = new Error('EACCES') as NodeJS.ErrnoException;
+        eaccesError.code = 'EACCES';
+
+        mockFs.writeFile
+          .mockRejectedValueOnce(eexistError)
+          .mockResolvedValueOnce(undefined);
+        mockFs.rename.mockRejectedValueOnce(eaccesError);
+        mockFs.unlink.mockResolvedValueOnce(undefined); // Cleanup of temp file
+
+        await expect(writeFileContent('/test/file.txt', 'content'))
+          .rejects.toThrow('EACCES');
+
+        // Should not have tried cp fallback
+        expect(mockFs.cp).not.toHaveBeenCalled();
+      });
     });
 
   });

src/filesystem/lib.ts

@@ -135,6 +135,27 @@ export async function readFileContent(filePath: string, encoding: string = 'utf-
   return await fs.readFile(filePath, encoding as BufferEncoding);
 }
 
+/**
+ * Atomically replaces a file by renaming a temporary file over it.
+ * On Windows, fs.rename() fails with EPERM when the target file is locked
+ * by another process (e.g., open in an editor). This function falls back
+ * to fs.cp() + fs.unlink() which can overwrite locked files.
+ */
+async function atomicReplaceFile(tempPath: string, targetPath: string): Promise<void> {
+  try {
+    await fs.rename(tempPath, targetPath);
+  } catch (error) {
+    // On Windows, rename fails with EPERM if target file is locked by another process
+    if ((error as NodeJS.ErrnoException).code === 'EPERM') {
+      // Fallback: copy over the locked file, then remove temp file
+      await fs.cp(tempPath, targetPath, { force: true });
+      await fs.unlink(tempPath);
+    } else {
+      throw error;
+    }
+  }
+}
+
 export async function writeFileContent(filePath: string, content: string): Promise<void> {
   try {
     // Security: 'wx' flag ensures exclusive creation - fails if file/symlink exists,
@@ -148,12 +169,12 @@ export async function writeFileContent(filePath: string, content: string): Promi
       const tempPath = `${filePath}.${randomBytes(16).toString('hex')}.tmp`;
       try {
         await fs.writeFile(tempPath, content, 'utf-8');
-        await fs.rename(tempPath, filePath);
-      } catch (renameError) {
+        await atomicReplaceFile(tempPath, filePath);
+      } catch (replaceError) {
         try {
           await fs.unlink(tempPath);
         } catch {}
-        throw renameError;
+        throw replaceError;
       }
     } else {
       throw error;
@@ -246,7 +267,7 @@ export async function applyFileEdits(
     const tempPath = `${filePath}.${randomBytes(16).toString('hex')}.tmp`;
     try {
       await fs.writeFile(tempPath, modifiedContent, 'utf-8');
-      await fs.rename(tempPath, filePath);
+      await atomicReplaceFile(tempPath, filePath);
     } catch (error) {
       try {
         await fs.unlink(tempPath);