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Releases: mmb-irb/MDDB-workflow

v0.1.10

28 Apr 09:53

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Fixed

  • Fix module import issues in CLI and dataset commands

v0.1.9

27 Apr 15:36

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Added

  • Add dataset summary, status, scan, inputs, and remove workflow commands
  • Add project and MD log links in dataset views
  • Add waiting state handling for SLURM jobs
  • Add membrane analysis support for united-atom and coarse-grained systems

Changed

  • Refactor dataset storage around SQLite-backed projects and MD entries
  • Update dataset behavior to overwrite entries with the same rel_path by default and hide UUIDs in show
  • Improve topology, ligand, and reference handling, including missing bonds, dummy atoms, and lipid/PubChem lookups
  • Improve workflow task naming, task tracking, and error handling across the console
  • Switch PDB trajectory handling to PyTraj to reduce memory usage

Fixed

  • Fix dataset summaries, empty MD inputs, and inconsistent input handling
  • Fix SAS and solvent handling in structure and screenshot generation
  • Fix ligand and reference edge cases, including null Mordred values and missing PubChem mappings
  • Fix runtime robustness issues around retries, timeouts, multiprocessing, and database locking

v0.0.1

14 Apr 11:15

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v0.0.1 Pre-release
Pre-release
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