Single cell data analysis tutorials

Single cell data analysis in Bioconductor

• Basic scRNA-Seq analysis (human pancreas, Baron et al. 2016)
• Cell type annotation (pbmc4k dataset, 10X Genomics)
• RNA velocity analysis using velociraptor (mouse spermatogenic cells, Hermann et al. 2018)
• RNA velocity analysis and cell fate mapping using scVelo and Cellrank (mouse spermatogenic cells, Hermann et al. 2018)

scRNA-Seq datasets

• Overview of the scRNAseq package datasets

Useful links

• Orchestrating Single-Cell Analysis with Bioconductor
• Analysis of single cell RNA-seq data (Sanger Institute, Hemberg Lab)
• Single cell RNA-Seq workshop (Broad Institute, 2019)